Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq323 140 4e-28 >seq323 Length=119441 Score = 140 bits (154), Expect = 4e-28 Identities = 274/402 (68%), Gaps = 5/402 (1%) Strand=Plus/Minus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 |||||||| || | || || || ||||| || ||||| || || | |||||||| ||| Sbjct 56522 TGTTTGATTCCTGTCTCTGCCCACGGAACCAACCCTGCCTCGGCTGCCATGGCAGGTATG 56463 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGA---TGATGGCAACATAGACATCAAAGATCTAGAG 159510 ||||| | ||||||||||| | ||| ||| | || ||| ||||| || Sbjct 56462 CGTGTTGTTCCTATCAAGTGTGATACCACTACTGGGAACTTGGATATCGCTGATCTGGAA 56403 Query 159511 AAGAAA-GCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTAC 159569 ||| |||| | | || | |||||| || |||||||| || || || ||| Sbjct 56402 GCGAAGTGCAAAAA-GCATGCTGATGAACTTGGCTGCATTATGATCACTTACCCTAGTAC 56344 Query 159570 ACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGG 159629 |||| | |||||| | || | || || ||| | |||| |||| ||||||| Sbjct 56343 TTTTGGTATCTTTGAACCTGACGTTCGAAAGGCCTGTGATCTTGTGCATGCCTATGGTGG 56284 Query 159630 TCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGA 159689 |||||||| | || || || || | ||||| || | ||||| | || |||| Sbjct 56283 CCAGGTATACATGGACGGCGCCAACATGAATGCCCAAATTGGTCTTACCTCTCCTGGTGA 56224 Query 159690 CTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGG 159749 ||| || ||||| || || || ||| |||||||||||||||| ||||| |||||||| Sbjct 56223 GATTGGCGCTGATGTGTGCCACCTGAACCTACATAAGACATTCTGCATTCCTCATGGAGG 56164 Query 159750 TGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCT 159791 || || |||||||| || ||||| |||| |||||||| Sbjct 56163 AGGTGGCCCTGGCGTCGGCCCTATCTGTGTCAAGAAACATCT 56122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045223929680