Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq734 107 1e-18
seq357 102 5e-17
>seq734
Length=84471
Score = 107 bits (118), Expect = 1e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|||||||||||||| || || || ||||| || ||||| || ||| | || ||||
Sbjct 21233 CAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATC 21292
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| ||||| || || || || || |||||||| | || | |||||||||||
Sbjct 21293 CTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 21352
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| |||||| | || | || | ||| || |||| ||| |||||
Sbjct 21353 CTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGT 21412
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| || |||||||| || ||||| ||||||
Sbjct 21413 CTTTCCAGTTAGAGTCTTGACGAAGATTTGCATA 21446
Score = 102 bits (112), Expect = 5e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|||||| | ||||| || || ||||| ||||| ||||| || ||| | || ||||
Sbjct 21461 CAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATC 21520
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||| ||||| || || || |||||||| | || | |||||||||||
Sbjct 21521 CTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 21580
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| |||||| | || | || | ||| || |||| ||| |||||
Sbjct 21581 CTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGT 21640
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| || |||||||| || ||||| ||||||
Sbjct 21641 CTTTCCAGTTAGAGTCTTGACGAAGATTTGCATA 21674
>seq357
Length=115873
Score = 102 bits (112), Expect = 5e-17
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || ||| | || |||| |||||||| || || || || ||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| |||||| ||||| || |
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT--T 5989
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || |||||| |||| ||| || || || ||||| || ||||| ||
Sbjct 5990 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 6049
Query 34970 AAAGATCTGCATATT 34984
|| |||||||| ||
Sbjct 6050 GAAAATCTGCATCTT 6064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324630383388264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |