Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq545 140 4e-28 >seq545 Length=97716 Score = 140 bits (154), Expect = 4e-28 Identities = 489/760 (64%), Gaps = 6/760 (1%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || | ||||||||| || || ||||| ||||||| || | ||| | || || Sbjct 74283 AAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAAT 74342 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| ||||| ||| | || ||||| | ||||| ||||| | ||| Sbjct 74343 CTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 74402 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || ||| ||||||||||| ||||| | |||||||| |||| | ||| | || | Sbjct 74403 GCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGC 74462 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | || ||||| | ||| | | | | || | || || || Sbjct 74463 ATACCACAGCTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTC 74522 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGAC 48174 ||| | |||||| || || ||||| || | | | || || || |||||||| || | Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGC 74581 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 |||| | | ||| ||||||| || | || | |||| || | || ||||| | Sbjct 74582 ACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGA 74641 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 | || | ||||| || | || | | |||||| || || ||| | || || | Sbjct 74642 GGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGA 74701 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | || || | | ||||||||||||||| || | || || || | | || ||||| | Sbjct 74702 GGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCT 74761 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || || || || || | ||| | ||| || ||||| |||| | | ||| || |||| Sbjct 74762 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAA 74821 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACT 48472 | || || || |||| || || || | ||| || ||| | || | ||| | Sbjct 74822 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAA 74881 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 |||| | ||| |||||||| ||||| || || || | || || || |||||||| Sbjct 74882 CATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATC 74939 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||||| ||||| ||||| |||||| |||| | | ||| ||||| ||||| |||| Sbjct 74940 GTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGC 74999 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || ||| || | ||| || | || || ||||| ||| Sbjct 75000 CTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGA 75039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103087569320