Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq545 140 4e-28
>seq545
Length=97716
Score = 140 bits (154), Expect = 4e-28
Identities = 489/760 (64%), Gaps = 6/760 (1%)
Strand=Plus/Plus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || | ||||||||| || || ||||| ||||||| || | ||| | || ||
Sbjct 74283 AAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAAT 74342
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|||| ||||| ||| | || ||||| | ||||| ||||| | |||
Sbjct 74343 CTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 74402
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
|| ||| ||||||||||| ||||| | |||||||| |||| | ||| | || |
Sbjct 74403 GCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGC 74462
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| | || ||||| | ||| | | | | || | || || ||
Sbjct 74463 ATACCACAGCTTCTGGGCCTTGACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTC 74522
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGAC 48174
||| | |||||| || || ||||| || | | | || || || |||||||| || |
Sbjct 74523 ATACAGAGCCTCAAACTCTTCGCCATAG-CAGTCTGCCAAGCCTGGGCATTCATTGGGGC 74581
Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234
|||| | | ||| ||||||| || | || | |||| || | || ||||| |
Sbjct 74582 ACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGA 74641
Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294
| || | ||||| || | || | | |||||| || || ||| | || || |
Sbjct 74642 GGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGA 74701
Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354
| || || | | ||||||||||||||| || | || || || | | || ||||| |
Sbjct 74702 GGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCT 74761
Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414
| || || || || || | ||| | ||| || ||||| |||| | | ||| || ||||
Sbjct 74762 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAA 74821
Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACT 48472
| || || || |||| || || || | ||| || ||| | || | ||| |
Sbjct 74822 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAA 74881
Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532
|||| | ||| |||||||| ||||| || || || | || || || ||||||||
Sbjct 74882 CATTG--AGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATC 74939
Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592
||||| ||||| ||||| |||||| |||| | | ||| ||||| ||||| ||||
Sbjct 74940 GTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGC 74999
Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632
|| ||| || | ||| || | || || ||||| |||
Sbjct 75000 CTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGA 75039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562103087569320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |