Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq357 104 2e-17 seq734 96.9 3e-15 seq1 82.4 6e-11 >seq357 Length=115873 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || ||||| ||||| ||||| || | || | || |||| |||||| || || || ||| Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| |||| |||||||||||| |||||| || ||| | Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | || || || | ||| ||||| | |||||||| || ||||| | || || || ||| Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053 Query 48759 ATCTGCATCGTG 48770 ||||||||| || Sbjct 6054 ATCTGCATCTTG 6065 >seq734 Length=84471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| |||||||||||||| || ||||| | || Sbjct 21228 AGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGG 21287 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| || |||| ||||| |||||| Sbjct 21288 CCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCC 21347 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||| | ||| Sbjct 21348 TTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTA 21407 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || || || || ||||| Sbjct 21408 ATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 >seq1 Length=316991 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 |||||||| | ||| |||| || || | ||||| | || || ||||| || | Sbjct 271750 TGAGCAATGCGGTCACCCTCTTTGACCTCGAAGTCGGCATCATGGTGGTTGAATAGGAGA 271691 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || | || | |||||| |||| || ||||||||||| |||||||||||| Sbjct 271690 ACCTTGACTTCGCCACGGTAATCGGCATCAATGACACCAGCACCGGTATCGATGAAGTGC 271631 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACC 9248 ||| | || || ||||||||||| ||||| ||||| Sbjct 271630 TTGGCAGCCAGGCCAGAGCGGGGAGCGATGCGACC 271596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933825503599