Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq126 203 6e-47 seq545 185 2e-41 >seq126 Length=40607 Score = 203 bits (224), Expect = 6e-47 Identities = 560/846 (66%), Gaps = 18/846 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| || | | |||||||||||| Sbjct 37813 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTC 37872 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | || ||| | || ||| | | |||| Sbjct 37873 CATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCT-TCTCGTTGCCTAGAGCAACAAGCA 37931 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || || |||| ||||||| ||| || | |||||| || | || Sbjct 37932 GGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGAC 37991 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||||| ||||| ||||| ||||||||||| ||| ||||| || | ||| Sbjct 37992 -CACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGATC 38050 Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | | ||| || || ||| || | ||||| |||||| || | | |||| ||| Sbjct 38051 TTTTGCACGAGGTCCTTGCTGGGGCGGTTGTT---CAGGTG--TGAGA-ACAGCAGGCAA 38104 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| || || || ||| || ||| |||| |||||| |||||| Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| | ||||||| || ||||| |||||| Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || ||||| || || | || |||| | | | |||||| | |||| Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGTCGACTCCTTGTCGGTGATC 38284 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || || |||||||| ||||| |||||| || || || || || || ||| Sbjct 38285 CACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAAC 38344 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | ||| || || ||| | ||||| || |||| | ||| | ||| Sbjct 38345 AGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTCA 38404 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | || || || ||||||||| ||||||||| | |||||| | ||| Sbjct 38405 GAGTGAATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGA 38464 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || ||||| | ||| | || || || ||||| || ||||| || || || ||| Sbjct 38465 ACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAAG 38524 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCCAGCC 48609 |||||||| | || | ||| | |||||| | | | || || |||||| | Sbjct 38525 AAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAG-GCGGTTGTTCCAGTC 38583 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | || ||| || || | || || ||||||||||||| || || || || Sbjct 38584 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTT 38643 Query 48670 GTACAT 48675 |||||| Sbjct 38644 GTACAT 38649 >seq545 Length=97716 Score = 185 bits (204), Expect = 2e-41 Identities = 796/1235 (64%), Gaps = 45/1235 (4%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | |||||| | ||| || |||||| Sbjct 73717 GGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAG 73776 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 || || | || ||| ||||| || |||||||||| ||||||||||| |||||||| || Sbjct 73777 GGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCA 73836 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || ||| || | || || |||| || | || || | ||||| Sbjct 73837 ACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTT-CTCCT----TCAGAGAAGTCC 73891 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 ||| ||| |||||| | |||| | |||||| |||||||||| |||||||| | Sbjct 73892 AATC--CCA--CAGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCCTTGG 73947 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 || || |||| || | ||||| | || | || ||| | || || Sbjct 73948 GAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAA 74007 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || ||| ||||||| |||||||||||||||||| | | ||||||||| || || Sbjct 74008 GCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTGCTTCA 74067 Query 213267 GGGGACGTGAAGGGCAT-CATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 |||||| || ||||| | | || |||| | |||||||| ||||| || || | Sbjct 74068 GGGGACTCAAAAGGCATGCGTAGAGCAA-GGAAGGCGTCAGCCAGACCCTGCACACCAAC 74126 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||| ||||| | || | || ||| ||| |||| |||| | || || ||| Sbjct 74127 GCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCT-TCCTGTACAGGATAGTGGTTCA 74185 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 || ||||| ||| ||||| || | || | |||||| | | || | | Sbjct 74186 CATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTT--- 74242 Query 213445 GATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCA 213498 | || | || | || || | ||| || ||| ||||||| || | Sbjct 74243 ---TAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTA 74299 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||| || || ||||| | || | | ||||| || ||||| ||||| ||||| Sbjct 74300 GGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAG 74359 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAG 213617 || || ||||| || || || | || || ||| ||| | |||| || ||||| Sbjct 74360 AGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTT-GCGGTTGCAGTGGTCTTTGTAA 74418 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACC 213675 |||||| | ||| || || || ||||| |||| || ||| ||| || | | Sbjct 74419 AGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAAT--GGCATACCACAGCTTCT 74476 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 ||||||||| ||| | ||| || | | | ||| |||| ||| || || | | Sbjct 74477 GGGCCTTGACAACCATGC-GACCGCGACCCTCCTT--CTCATACTTTTCATACAGAGCCT 74533 Query 213736 TGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 || || | ||| || | ||| | || || || || ||| |||||||| || Sbjct 74534 CAAACTCTTCGCCATAGCAGTCTGCCAAG-CCTGGGCATTCATTGGGGCACATGAGCGTC 74592 Query 213795 CAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 |||||| | | | |||| || | || |||||||||||| || ||| || || || Sbjct 74593 CAGTCCTCATTCTTCTCA-ACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAA 74651 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 ||||| | | | || ||| ||| ||| ||||| || || || || ||||| Sbjct 74652 TAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAA 74711 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970 || || || ||||| ||||| | ||| || |||||||| || || | |||| || || Sbjct 74712 GACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCACC 74771 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 |||||| || | ||| ||||||| | ||||| | ||| || | ||||| || Sbjct 74772 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGA 74831 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG--GTTGCTCATGGAGAGC 214088 ||||| || || || || || ||||| | ||| | | | || ||| |||| Sbjct 74832 AGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGA-- 74889 Query 214089 CCTATGCCACCGGCGTACTTGGAGATCATGGCGCA 214123 || || |||||||| |||||| ||||||||||| Sbjct 74890 CCGATACCACCGGCCATCTTGGAAATCATGGCGCA 74924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931523333297920