Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq126 212 1e-49
seq545 145 1e-29
>seq126
Length=40607
Score = 212 bits (234), Expect = 1e-49
Identities = 570/862 (66%), Gaps = 34/862 (4%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||||||| | ||| |||||| || || |||||||||||
Sbjct 38658 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 38599
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| | ||| |||| || || || ||| ||||||||| | || ||
Sbjct 38598 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGAACAAGGACGAGCAGTACTTCATCTC 38540
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | | || ||||| || ||||||||||| || || ||||| || || ||| |
Sbjct 38539 CCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCG 38480
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
||| | | || || ||| | |||||| || ||||||||||||||||| ||
Sbjct 38479 CTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 38420
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGAC 25767
||||| | |||||||| || | ||| ||||| || ||||| | || |
Sbjct 38419 GGAAAACATTCACTCTGAAACCTA---CTCGCTGCTGATCGACACCTACATCAAGGAGCC 38363
Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAA 25826
|| | | | | || ||||| ||| || || ||| || ||| ||||| | ||
Sbjct 38362 ATCACAGCG-CACAT-ACCTGTTCAATGCAATTGA-CACTATTCCCTGCATCCGCCGCAA 38306
Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886
||| ||||| |||||||||||| | | || | || || | | |||| |||||
Sbjct 38305 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGT 38246
Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946
||| || |||||||| || |||||||||||| ||| | || || | || ||||||||
Sbjct 38245 AGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCT 38186
Query 25947 ---CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
||||| | || | |||||| || ||| ||| || |||||||| || | | |
Sbjct 38185 GCGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTG 38130
Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062
| |||||||| |||| || ||||| |||||||| | | | ||| || | || |
Sbjct 38129 ATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTGTTCTC---ACACCTGAACAAC-CGC 38074
Query 26063 CTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120
| |||| ||| ||| | | ||||||| || || || | |||||||||||||||
Sbjct 38073 CCCAGCAAG-GACCTCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTT 38015
Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180
| |||| |||||| | || |||| |||||
Sbjct 38014 CCTCACGGAGGCTCTGCCCTGTGGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATA 37955
Query 26181 CATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239
|||||||| ||| || |||| |||| ||| | || || || | | ||| ||
Sbjct 37954 CATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCTAGGCAACGAGAAGGTTTACCGTG 37896
Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299
| | ||||| |||||||| ||||| ||||| ||| | | || ||||||||||||||||
Sbjct 37895 CCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTG 37836
Query 26300 AAAAGAGGGTCGGCGACTATCA 26321
| ||| | ||||| ||||| ||
Sbjct 37835 AGAAGCGTGTCGGTGACTACCA 37814
>seq545
Length=97716
Score = 145 bits (160), Expect = 1e-29
Identities = 628/978 (64%), Gaps = 29/978 (3%)
Strand=Plus/Plus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|| ||||| ||||| || ||||| || | ||||| || ||||| || || |||
Sbjct 74296 GCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGG 74355
Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829
|| ||||| ||||| || || | || ||||| |||||| ||| ||| | ||
Sbjct 74356 TTAGAGCTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG-CAGTGGTC 74411
Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889
||||| ||||| || || |||||| || ||| || ||||||| | ||| ||
Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471
Query 221890 TTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGA 221948
| ||||| || | || ||| || |||||| ||| |||||| ||| |
Sbjct 74472 CT-TCTGGGCCTTGACAACCATGCGACCGCGACCCTC---CTTCTCATACTTTTCATACA 74527
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008
| ||||||| ||| || || || ||| |||||| || ||| ||||| |
Sbjct 74528 GAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587
Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
| |||||| || || | | || | || |||||| ||||| |||||| || |||
Sbjct 74588 GCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCA 74647
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
||| || || | | || || ||| |||| ||| || | || || | ||||
Sbjct 74648 AAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACT 74707
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
|||| | ||||| ||||| ||||| || || | || | || |||||||||||||| |
Sbjct 74708 CAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTC 74767
Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
||||||| | || ||| | | | |||||| | || || | || || | |||
Sbjct 74768 CACCCTGGT-CAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307
|| || |||||| ||||| |||||| | || ||| | | ||| || ||
Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCAC---GAATAC-GGTGAAC 74882
Query 222308 AT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363
|| |||||||||||||| || || ||||||||||| ||||||| || ||
Sbjct 74883 ATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942
Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423
||||| || ||| ||| || || | || | || ||||| || |||| ||| | |
Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTG 75002
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
|| | || ||| || || ||||| || ||||| || ||| | |||||||| ||
Sbjct 75003 GGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAG 75062
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543
| ||| || || | || | ||| ||||| || ||| || || | |||
Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCAT 75122
Query 222544 GTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTT 222600
||||| |||||| | || || | | || | || | |||||| |||||
Sbjct 75123 TATCATGTGCTGGGGACGTTCAAC-GATCTTGCCGTCAAGTT--TGAGCAGATACGAACG 75179
Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660
|| || |||||||| |||||||| | | || ||||| | ||| || | ||| |
Sbjct 75180 CTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 75239
Query 222661 GTCCAGCTCCGACTTGTG 222678
||||||||| ||||||
Sbjct 75240 GTCCAGCTCATCCTTGTG 75257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928835360614720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |