Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq126 212 1e-49 seq545 145 1e-29 >seq126 Length=40607 Score = 212 bits (234), Expect = 1e-49 Identities = 570/862 (66%), Gaps = 34/862 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | ||| |||||| || || ||||||||||| Sbjct 38658 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 38599 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || ||| ||||||||| | || || Sbjct 38598 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGAACAAGGACGAGCAGTACTTCATCTC 38540 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || ||||||||||| || || ||||| || || ||| | Sbjct 38539 CCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGTTGAGCG 38480 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || ||| | |||||| || ||||||||||||||||| || Sbjct 38479 CTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 38420 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTA--CAGAC 25767 ||||| | |||||||| || | ||| ||||| || ||||| | || | Sbjct 38419 GGAAAACATTCACTCTGAAACCTA---CTCGCTGCTGATCGACACCTACATCAAGGAGCC 38363 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAA 25826 || | | | | || ||||| ||| || || ||| || ||| ||||| | || Sbjct 38362 ATCACAGCG-CACAT-ACCTGTTCAATGCAATTGA-CACTATTCCCTGCATCCGCCGCAA 38306 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| |||||||||||| | | || | || || | | |||| ||||| Sbjct 38305 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACCTTCGCCCAGCGCCTGGT 38246 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 ||| || |||||||| || |||||||||||| ||| | || || | || |||||||| Sbjct 38245 AGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTCTGGCT 38186 Query 25947 ---CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||| | || | |||||| || ||| ||| || |||||||| || | | | Sbjct 38185 GCGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGTG 38130 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 | |||||||| |||| || ||||| |||||||| | | | ||| || | || | Sbjct 38129 ATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTGTTCTC---ACACCTGAACAAC-CGC 38074 Query 26063 CTTCTCAAGAGAC--CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | |||| ||| ||| | | ||||||| || || || | ||||||||||||||| Sbjct 38073 CCCAGCAAG-GACCTCGTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTT 38015 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180 | |||| |||||| | || |||| ||||| Sbjct 38014 CCTCACGGAGGCTCTGCCCTGTGGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATA 37955 Query 26181 CATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTA 26239 |||||||| ||| || |||| |||| ||| | || || || | | ||| || Sbjct 37954 CATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCTAGGCAACGAGAAGGTTTACCGTG 37896 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 | | ||||| |||||||| ||||| ||||| ||| | | || |||||||||||||||| Sbjct 37895 CCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTG 37836 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||| | ||||| ||||| || Sbjct 37835 AGAAGCGTGTCGGTGACTACCA 37814 >seq545 Length=97716 Score = 145 bits (160), Expect = 1e-29 Identities = 628/978 (64%), Gaps = 29/978 (3%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || ||||| || | ||||| || ||||| || || ||| Sbjct 74296 GCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGG 74355 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| ||||| || || | || ||||| |||||| ||| ||| | || Sbjct 74356 TTAGAGCTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG-CAGTGGTC 74411 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 ||||| ||||| || || |||||| || ||| || ||||||| | ||| || Sbjct 74412 TTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACAG 74471 Query 221890 TTCTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | ||||| || | || ||| || |||||| ||| |||||| ||| | Sbjct 74472 CT-TCTGGGCCTTGACAACCATGCGACCGCGACCCTC---CTTCTCATACTTTTCATACA 74527 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 | ||||||| ||| || || || ||| |||||| || ||| ||||| | Sbjct 74528 GAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGA 74587 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||||| || || | | || | || |||||| ||||| |||||| || ||| Sbjct 74588 GCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCA 74647 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 ||| || || | | || || ||| |||| ||| || | || || | |||| Sbjct 74648 AAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACT 74707 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | ||||| ||||| ||||| || || | || | || |||||||||||||| | Sbjct 74708 CAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTC 74767 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| | || ||| | | | |||||| | || || | || || | ||| Sbjct 74768 CACCCTGGT-CAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC 222307 || || |||||| ||||| |||||| | || ||| | | ||| || || Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCAC---GAATAC-GGTGAAC 74882 Query 222308 AT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || |||||||||||||| || || ||||||||||| ||||||| || || Sbjct 74883 ATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTA 74942 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||||| || ||| ||| || || | || | || ||||| || |||| ||| | | Sbjct 74943 AATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTG 75002 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 || | || ||| || || ||||| || ||||| || ||| | |||||||| || Sbjct 75003 GGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAG 75062 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543 | ||| || || | || | ||| ||||| || ||| || || | ||| Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCAT 75122 Query 222544 GTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTT 222600 ||||| |||||| | || || | | || | || | |||||| ||||| Sbjct 75123 TATCATGTGCTGGGGACGTTCAAC-GATCTTGCCGTCAAGTT--TGAGCAGATACGAACG 75179 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 || || |||||||| |||||||| | | || ||||| | ||| || | ||| | Sbjct 75180 CTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 75239 Query 222661 GTCCAGCTCCGACTTGTG 222678 ||||||||| |||||| Sbjct 75240 GTCCAGCTCATCCTTGTG 75257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835360614720