Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq734 114 8e-20
>seq734
Length=84471
Score = 114 bits (126), Expect = 8e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| | ||||| ||||| ||| || || | || || || | ||| ||
Sbjct 21452 ACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGT 21511
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||||||||||||||| ||||| || || || || ||||| ||
Sbjct 21512 GCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACC 21571
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| ||||| ||||| ||||| | || | | ||| |
Sbjct 21572 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTA-CTTCGA 21630
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||||| || || || || |||||||| ||||| |||||
Sbjct 21631 GGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTG 21670
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| | || | ||||| ||| || || || ||| || || | ||| ||
Sbjct 21224 ACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGT 21283
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||| ||||||||||| ||||| ||||| || || || || ||||| ||
Sbjct 21284 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACC 21343
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| ||||| ||||| ||||| | | | | || |
Sbjct 21344 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCA-CCTCGA 21402
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||||| || || || || |||||||| ||||| |||||
Sbjct 21403 GGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTG 21442
Score = 95.1 bits (104), Expect = 8e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| | ||||| ||||| ||| |||||| | ||| || || | ||| ||
Sbjct 21680 ACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGATAGGGT 21739
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||| ||||||||||| ||||| ||||| || || || || ||||| ||
Sbjct 21740 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACC 21799
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712
|||||||| || ||||| ||||| ||||| |||||
Sbjct 21800 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATC 21841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268144326485324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |