Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq323 125 8e-24 >seq323 Length=119441 Score = 125 bits (138), Expect = 8e-24 Identities = 271/402 (67%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 |||||||| |||| ||||| || |||||||| || || |||||||| ||||| ||| Sbjct 56122 AGATGTTTCTTGACACAGATAGGGCCGACGCCAGGGCCACCTCCTCCATGAGGAATGCAG 56181 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA 138290 ||||||||||||| || || || || ||||| || ||| |||| || | ||| Sbjct 56182 AATGTCTTATGTAGGTTCAGGTGGCACACATCAGCGCCAATCTCACCAGGAGAGGTAAGA 56241 Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACG 138350 || | || ||||| | || || || || | |||||||| ||||||| | |||| || Sbjct 56242 CCAATTTGGGCATTCATGTTGGCGCCGTCCATGTATACCTGGCCACCATAGGCATGCACA 56301 Query 138351 ATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATC 138410 | | ||| || || | || | |||||| | |||| ||| || || || ||| Sbjct 56302 AGATCACAGGCCTTTCGAACGTCAGGTTCAAAGATACCAAAAGTACTAGGGTAAGTGATC 56361 Query 138411 ATAATACATGAGAGTTCAAATGTATTCATGATTGC-TTTCTTCTCTAGATCTTTGATGTC 138469 ||||| || |||||| | || | | |||| ||| || ||||| ||| || Sbjct 56362 ATAATGCAGCCAAGTTCATCAGCATGC-TTTTTGCACTTCGCTTCCAGATCAGCGATATC 56420 Query 138470 TATGTTGCCATCA---TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGC 138526 | ||| ||| | ||||||||||| | ||||| ||| ||||||||| | || Sbjct 56421 CAAGTTCCCAGTAGTGGTATCACACTTGATAGGAACAACACGCATACCTGCCATGGCAGC 56480 Query 138527 ACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACA 138568 ||||| || ||||| || || || | || |||| ||| Sbjct 56481 CGAGGCAGGGTTGGTTCCGTGGGCAGAGACAGGAATCAAACA 56522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992515928760