Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq545 165 1e-35
seq126 120 4e-22
>seq545
Length=97716
Score = 165 bits (182), Expect = 1e-35
Identities = 1052/1663 (63%), Gaps = 67/1663 (4%)
Strand=Plus/Minus
Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364
|||| ||||||| |||| || ||||||||||| ||||| || ||||| ||||
Sbjct 75044 TTCACTCACGCATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCA 74985
Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424
|| ||||| | | || || || ||| ||| | || || || | || || | | |
Sbjct 74984 TGTTTCCTAGTTGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAG-AC 74926
Query 75425 TGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAG 75482
| ||||| | || || ||| ||| || ||||| || | | | || | | | |
Sbjct 74925 T-TGCGCCATGATTTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTG 74867
Query 75483 CCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 75542
||| | || ||| || || || ||| || | || ||| |||| ||||| |
Sbjct 74866 CCACTGGCTCCTACATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGC 74807
Query 75543 GCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGT 75596
| || || ||| ||| || || ||||| | || | || ||| | | ||
Sbjct 74806 GTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCC---GGAG 74750
Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGAC 75656
|| | || | ||| | || ||||||||||| ||| || | |||||||| || ||||
Sbjct 74749 CCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCA 74690
Query 75657 TCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCA 75715
||||| || | ||||| | || ||| | | || || |||| |||| |||||
Sbjct 74689 AGAACCACGGAAAGGAAGAAG-TCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGT 74631
Query 75716 GACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG-TCCAGACAA 75774
||||| ||||||||||| |||||| || || | ||| | || | || ||| ||
Sbjct 74630 GACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAA 74571
Query 75775 GGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATG 75833
|| ||||| | | ||| || | || || |||||||| || || || ||||||||
Sbjct 74570 TGC-CCAGGCTTGGCAGACTGCTAT-GGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATG 74513
Query 75834 AAGAGGAGGGTAGAG--CCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTC 75890
| |||||||| | | | || | ||| | || | | || | | ||| | || ||||
Sbjct 74512 AGAAGGAGGGTCGCGGTCGCAT--GGTTGT-CAAGGCCCAGAAGCTGTGGTATGCCATTC 74456
Query 75891 TCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGA 75950
| || | ||||| || ||||| | || | ||||||||||| || || ||| |
Sbjct 74455 TGGAAGCCCAGACTGAAACTGGCAACCCTTTCATGCTTTACAAAGACCACTGCAACCGCA 74396
Query 75951 AGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAG 76010
|||| || || || ||| | || || || ||||| || || ||||| || ||| | |
Sbjct 74395 AGAGCAATCAGAAAAATCTAGGTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTG 74336
Query 76011 AGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070
|||| | |||||| ||||| ||||| | ||||| |||||||||| |
Sbjct 74335 AGTATTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCT 74276
Query 76071 ATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTG 76130
|| | | | | | | ||| | | |||| || || ||| |||| || |||
Sbjct 74275 TCGTGGACTACAACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTTG 74216
Query 76131 TTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190
|| ||| || ||||| ||||||| || ||||| || || || | |
Sbjct 74215 TTGTTCGAAACCTGAACCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCACA 74156
Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250
| || ||||| || | || ||||| | ||||| || ||||| || || | ||
Sbjct 74155 ACAGCAACATGCGCCATCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTCC 74096
Query 76251 TTTTGTGCCGCTACGCA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTAT 76305
|| | ||||||| ||||| || |||||| || | || | ||
Sbjct 74095 TT-----GCTCTACGCATGCCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAAT 74041
Query 76306 CTTTGAAACCATGTATCACGCATCCCTGGAGGC-GAGTTGTGAATTGGCTGAAGCCCAAG 76364
||||||||||| || ||||| | ||| || | || ||| | || | || | |
Sbjct 74040 ATTTGAAACCATCTACCACGCTGCACTGACTGCTTCGATG-GAAATCGCCCAGACCGAGG 73982
Query 76365 GTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGT 76424
|| | || || | |||||||||||| | |||||||| | || |||||||||||||
Sbjct 73981 GTACTTACTCAACCTATGAGGGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGT 73922
Query 76425 GGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGA 76482
||| | |||| || || | | | | || ||| | ||| ||||| || || |
Sbjct 73921 GGG-ATGTGACTCCCAG-TGACCTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACA 73864
Query 76483 GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT 76542
| | ||| | || || |||| | | ||||| ||||| |||||| ||| |||| ||
Sbjct 73863 GCATGGTGTACGCAATTCTCTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGAT 73804
Query 76543 CTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCT 76602
| || || ||||| ||||||||||| ||||| | |||||||||| | | | ||
Sbjct 73803 TCTTGGCAACAATGAGTGCTTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCT 73744
Query 76603 CGCAGGTGAGTTTGTCATTGTCAACAAGCACCT--CGTCAA--TGACCTCAAGAAGATTG 76658
|| || ||||| | ||||| | ||| | || | |||||| | |||
Sbjct 73743 TGCTGGCGAGTTCCAGGTCGTCAA----CCCCTGGCTTCTACGTGACCTGGTCGATCTTG 73688
Query 76659 GTCTCTGGTCCAAGGATATGAAGGATCTCA----TGGTGAAAGCGGGTGGTTCCATTCAA 76714
|||| ||||| | |||||||| ||| || || || | | || ||||||||
Sbjct 73687 GTCTATGGTCTGACAATATGAAGAATCGCATTATTGCCGACAAC----GGCTCCATTCAG 73632
Query 76715 AATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---C 76771
|| || || || || |||||| || ||| ||| || || ||||| || |
Sbjct 73631 AACATTTCCAGCATTCCTCCTGATATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCC 73572
Query 76772 AAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 76831
|| | || || | | ||||| || || |||||| |||||||| ||| ||
Sbjct 73571 CAGCGTACAGTTG---TACAAATGGCTGCTGACCGTGGTGCTTTCATTGACCAA--TCGC 73517
Query 76832 AGTATGAATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGT 76889
||| | | ||| |||| || ||| || ||| |||| || | ||||| |
Sbjct 73516 AGTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTG 73457
Query 76890 ACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932
|| ||||||| ||| ||||| || || |||||||| || ||
Sbjct 73456 CCGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACG 73414
>seq126
Length=40607
Score = 120 bits (132), Expect = 4e-22
Identities = 525/819 (64%), Gaps = 29/819 (4%)
Strand=Plus/Minus
Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770
|||||||| || || ||||| | ||||| ||||| |||||||||| | || ||||
Sbjct 38622 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTGAAC 38563
Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830
| | || || | ||||| |||| || || ||||| || | || ||||| |||
Sbjct 38562 AAGGACGAGCAGTACTTCATCTCCCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATT 38503
Query 64831 GTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890
|| || || || | | || ||| || || ||||| ||| || ||||
Sbjct 38502 GTCAACGAAAACCTCGTTGAGCGCTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGC 38443
Query 64891 TTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGAT 64949
||||||| | || | ||| ||| ||| |||| ||||| || || ||||
Sbjct 38442 TTCTACGGTT-TCCAGATCATGATGGAAAACATTCACTCTGAAACCTACTCGCTGCTGAT 38384
Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTG----AAGCCATCCAAA 65005
|||| ||||| ||||| ||| | || ||| || || | || || | |
Sbjct 38383 CGACACCTACATCAAGGAGCCATC---ACAGC-GCACATACCTGTTCAATGCAATTGACA 38328
Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCT 65064
|| | || || || ||||| | ||||| |||| ||| | | |||| | |
Sbjct 38327 CTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGT 38268
Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124
|| |||||||| ||||||| | || || || ||| || || ||||| ||||| ||
Sbjct 38267 CGA-CCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGT 38209
Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184
| ||| | |||||| ||| || ||||| ||||||||||| || || |||||||
Sbjct 38208 GCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCA 38149
Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC-AA 65243
|| || ||||||||||| ||||||||||| ||| || ||||| ||| ||| |
Sbjct 38148 AACGAGCTTATTTCCCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTGTTCTCA 38089
Query 65244 GACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303
|| || || | |||| | || | || ||| | | || || ||||
Sbjct 38088 CAC-CTGAACAACCGCCCCAGCAAGGACCTCGTGCAAAAGATCATCACTGACGCCGTTGT 38030
Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363
||| ||||| | |||| || ||| || || || ||| ||| | || |||||| | ||
Sbjct 38029 GATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGTGGTCTACTGGGAATGAACGCCGA 37970
Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GC 65422
|||| | |||||||||| ||| | || || || || |||| | |
Sbjct 37969 TCTGATGAAGCAATACATTGAGTTTGTTGCTGACCGCCTGCT------TGTTGCTCTAGG 37916
Query 65423 CACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477
|| | | ||| || | ||| || || ||||| ||||| ||||| || |
Sbjct 37915 CAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTCGG 37856
Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
|| ||||||||||||||||||||||| || || |||||
Sbjct 37855 CGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 37817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596563537361440
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