Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq545 165 1e-35 seq126 120 4e-22 >seq545 Length=97716 Score = 165 bits (182), Expect = 1e-35 Identities = 1052/1663 (63%), Gaps = 67/1663 (4%) Strand=Plus/Minus Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| ||||||| |||| || ||||||||||| ||||| || ||||| |||| Sbjct 75044 TTCACTCACGCATCACCTACGCTCTTCAATGCCGGTACTCCCCAGGCGCAGTTGTCTTCA 74985 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 || ||||| | | || || || ||| ||| | || || || | || || | | | Sbjct 74984 TGTTTCCTAGTTGACATGAAAGATGACAGTATCGAAGGCATTTACGATACCCTCAAG-AC 74926 Query 75425 TGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAG 75482 | ||||| | || || ||| ||| || ||||| || | | | || | | | | Sbjct 74925 T-TGCGCCATGATTTCCAAGATGGCCGGTGGTATCGGTCTCAATGTTCACCGTATTCGTG 74867 Query 75483 CCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 75542 ||| | || ||| || || || ||| || | || ||| |||| ||||| | Sbjct 74866 CCACTGGCTCCTACATTGCTGGCACTAACGGTACTTCGAACGGCATTGTTCCCATGCTGC 74807 Query 75543 GCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGT 75596 | || || ||| ||| || || ||||| | || | || ||| | | || Sbjct 74806 GTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCC---GGAG 74750 Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGAC 75656 || | || | ||| | || ||||||||||| ||| || | |||||||| || |||| Sbjct 74749 CCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTCTTTGAGTTCCTCGACCTACGCA 74690 Query 75657 TCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCA 75715 ||||| || | ||||| | || ||| | | || || |||| |||| ||||| Sbjct 74689 AGAACCACGGAAAGGAAGAAG-TCCGTGCTCGTGACCTATTTTTGGCCCTCTGGATCTGT 74631 Query 75716 GACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG-TCCAGACAA 75774 ||||| ||||||||||| |||||| || || | ||| | || | || ||| || Sbjct 74630 GACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACGCTCATGTGCCCCAATGAA 74571 Query 75775 GGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATG 75833 || ||||| | | ||| || | || || |||||||| || || || |||||||| Sbjct 74570 TGC-CCAGGCTTGGCAGACTGCTAT-GGCGAAGAGTTTGAGGCTCTGTATGAAAAGTATG 74513 Query 75834 AAGAGGAGGGTAGAG--CCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTC 75890 | |||||||| | | | || | ||| | || | | || | | ||| | || |||| Sbjct 74512 AGAAGGAGGGTCGCGGTCGCAT--GGTTGT-CAAGGCCCAGAAGCTGTGGTATGCCATTC 74456 Query 75891 TCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGA 75950 | || | ||||| || ||||| | || | ||||||||||| || || ||| | Sbjct 74455 TGGAAGCCCAGACTGAAACTGGCAACCCTTTCATGCTTTACAAAGACCACTGCAACCGCA 74396 Query 75951 AGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAG 76010 |||| || || || ||| | || || || ||||| || || ||||| || ||| | | Sbjct 74395 AGAGCAATCAGAAAAATCTAGGTACCATTCGCAGCTCTAACCTATGCACTGAGATTATTG 74336 Query 76011 AGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 |||| | |||||| ||||| ||||| | ||||| |||||||||| | Sbjct 74335 AGTATTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTCTCGCCCTTCCTTCCT 74276 Query 76071 ATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTG 76130 || | | | | | | ||| | | |||| || || ||| |||| || ||| Sbjct 74275 TCGTGGACTACAACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACCCAGGTTG 74216 Query 76131 TTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 || ||| || ||||| ||||||| || ||||| || || || | | Sbjct 74215 TTGTTCGAAACCTGAACCGCATCATTGATGTGAACCACTATCCTGTACAGGAAGCTCACA 74156 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 | || ||||| || | || ||||| | ||||| || ||||| || || | || Sbjct 74155 ACAGCAACATGCGCCATCGTCCCATTGGCGTTGGTGTGCAGGGTCTGGCTGACGCCTTCC 74096 Query 76251 TTTTGTGCCGCTACGCA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTAT 76305 || | ||||||| ||||| || |||||| || | || | || Sbjct 74095 TT-----GCTCTACGCATGCCTTTTGAGTCCCCTGAAGCACGTCAGCTCAACAAGCAAAT 74041 Query 76306 CTTTGAAACCATGTATCACGCATCCCTGGAGGC-GAGTTGTGAATTGGCTGAAGCCCAAG 76364 ||||||||||| || ||||| | ||| || | || ||| | || | || | | Sbjct 74040 ATTTGAAACCATCTACCACGCTGCACTGACTGCTTCGATG-GAAATCGCCCAGACCGAGG 73982 Query 76365 GTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGT 76424 || | || || | |||||||||||| | |||||||| | || ||||||||||||| Sbjct 73981 GTACTTACTCAACCTATGAGGGTTCTCCTGTCTCCCAAGGCATCCTGCAGTTTGATATGT 73922 Query 76425 GGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGA 76482 ||| | |||| || || | | | | || ||| | ||| ||||| || || | Sbjct 73921 GGG-ATGTGACTCCCAG-TGACCTGTGGGATTGGACTTCTCTGAAGGAGAAGATTAAACA 73864 Query 76483 GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT 76542 | | ||| | || || |||| | | ||||| ||||| |||||| ||| |||| || Sbjct 73863 GCATGGTGTACGCAATTCTCTTCTCGTTGCACCCATGCCTACAGCCAGCACATCACAGAT 73804 Query 76543 CTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCT 76602 | || || ||||| ||||||||||| ||||| | |||||||||| | | | || Sbjct 73803 TCTTGGCAACAATGAGTGCTTTGAACCCTACACGTCCAACATCTACCAGCGCCGCGTTCT 73744 Query 76603 CGCAGGTGAGTTTGTCATTGTCAACAAGCACCT--CGTCAA--TGACCTCAAGAAGATTG 76658 || || ||||| | ||||| | ||| | || | |||||| | ||| Sbjct 73743 TGCTGGCGAGTTCCAGGTCGTCAA----CCCCTGGCTTCTACGTGACCTGGTCGATCTTG 73688 Query 76659 GTCTCTGGTCCAAGGATATGAAGGATCTCA----TGGTGAAAGCGGGTGGTTCCATTCAA 76714 |||| ||||| | |||||||| ||| || || || | | || |||||||| Sbjct 73687 GTCTATGGTCTGACAATATGAAGAATCGCATTATTGCCGACAAC----GGCTCCATTCAG 73632 Query 76715 AATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---C 76771 || || || || || |||||| || ||| ||| || || ||||| || | Sbjct 73631 AACATTTCCAGCATTCCTCCTGATATTAAAGCTCTGTACAAGACGGTTTGGGAGATTTCC 73572 Query 76772 AAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 76831 || | || || | | ||||| || || |||||| |||||||| ||| || Sbjct 73571 CAGCGTACAGTTG---TACAAATGGCTGCTGACCGTGGTGCTTTCATTGACCAA--TCGC 73517 Query 76832 AGTATGAATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGT 76889 ||| | | ||| |||| || ||| || ||| |||| || | ||||| | Sbjct 73516 AGTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTG 73457 Query 76890 ACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 || ||||||| ||| ||||| || || |||||||| || || Sbjct 73456 CCGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACG 73414 >seq126 Length=40607 Score = 120 bits (132), Expect = 4e-22 Identities = 525/819 (64%), Gaps = 29/819 (4%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 |||||||| || || ||||| | ||||| ||||| |||||||||| | || |||| Sbjct 38622 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTGAAC 38563 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 | | || || | ||||| |||| || || ||||| || | || ||||| ||| Sbjct 38562 AAGGACGAGCAGTACTTCATCTCCCACATTCTTGCCTTCTTCGCCGCCTCTGATGGCATT 38503 Query 64831 GTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890 || || || || | | || ||| || || ||||| ||| || |||| Sbjct 38502 GTCAACGAAAACCTCGTTGAGCGCTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGC 38443 Query 64891 TTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGAT 64949 ||||||| | || | ||| ||| ||| |||| ||||| || || |||| Sbjct 38442 TTCTACGGTT-TCCAGATCATGATGGAAAACATTCACTCTGAAACCTACTCGCTGCTGAT 38384 Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTG----AAGCCATCCAAA 65005 |||| ||||| ||||| ||| | || ||| || || | || || | | Sbjct 38383 CGACACCTACATCAAGGAGCCATC---ACAGC-GCACATACCTGTTCAATGCAATTGACA 38328 Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCT 65064 || | || || || ||||| | ||||| |||| ||| | | |||| | | Sbjct 38327 CTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGT 38268 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 || |||||||| ||||||| | || || || ||| || || ||||| ||||| || Sbjct 38267 CGA-CCTTCGCCCAGCGCCTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGT 38209 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 | ||| | |||||| ||| || ||||| ||||||||||| || || ||||||| Sbjct 38208 GCTTTCGCCTCTATTTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCA 38149 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC-AA 65243 || || ||||||||||| ||||||||||| ||| || ||||| ||| ||| | Sbjct 38148 AACGAGCTTATTTCCCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTGCTGTTCTCA 38089 Query 65244 GACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303 || || || | |||| | || | || ||| | | || || |||| Sbjct 38088 CAC-CTGAACAACCGCCCCAGCAAGGACCTCGTGCAAAAGATCATCACTGACGCCGTTGT 38030 Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363 ||| ||||| | |||| || ||| || || || ||| ||| | || |||||| | || Sbjct 38029 GATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGTGGTCTACTGGGAATGAACGCCGA 37970 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GC 65422 |||| | |||||||||| ||| | || || || || |||| | | Sbjct 37969 TCTGATGAAGCAATACATTGAGTTTGTTGCTGACCGCCTGCT------TGTTGCTCTAGG 37916 Query 65423 CACCCA-----TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGA 65477 || | | ||| || | ||| || || ||||| ||||| ||||| || | Sbjct 37915 CAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGACTTCATGGAGAACATCTCGCTCGG 37856 Query 65478 TGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || ||||||||||||||||||||||| || || ||||| Sbjct 37855 CGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 37817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563537361440