Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq243 132 6e-25
seq204 123 3e-22
seq545 122 1e-21
seq579 111 2e-18
seq126 102 1e-15
>seq243
Length=27540
Score = 132 bits (146), Expect = 6e-25
Identities = 266/393 (68%), Gaps = 6/393 (2%)
Strand=Plus/Minus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
|||||| ||||||||||| || ||||||||||||||| ||| || || || |
Sbjct 5317 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAATCCACCACCCGGCCT 5258
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| || |||| || ||||||||||||||| || ||| || |||| || ||| | |
Sbjct 5257 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGTCGGAGACCCGGTCAGAGTTC 5198
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
|| | || |||||||| || || || || | || | ||||||| ||| |||
Sbjct 5197 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACAATTCTGTCGGGCTGCGAGTTCGG 5138
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|| || || ||| | ||| | | ||| || ||| |||||||||||| ||
Sbjct 5137 CCGTACTCTAGGCACTCCCATTGCCCTGAGCGTCAACAATGAAGACCAGCGGCCCCGTGA 5078
Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389
|| | | ||| ||| |||| || |||||||| || || || | ||||||| |
Sbjct 5077 CTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACCTACCT 5018
Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449
|| || ||| |||||||||| ||||| || || |||||| ||| || || || |
Sbjct 5017 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGCAGTGCTCGTGAAACTAT 4958
Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||||| || || || ||||| ||||| ||
Sbjct 4957 TGCGCGCGTGGCTGCTGGTGCGGTGGCCGAAAA 4925
Score = 91.5 bits (100), Expect = 2e-12
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111
|| ||| ||||| || || || || ||||||||||| | ||||| || ||||||
Sbjct 4684 CACCGGTGGCACTGTCACTTGTGTTATCCGCAACGTGCCCACGGGCCTTGGTGAGCCGGC 4625
Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171
|||||| ||| | |||||| ||| || || || |||||| ||||| ||| |||||
Sbjct 4624 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 4565
Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199
|| ||||||||| ||| ||||| |||
Sbjct 4564 CTTTGAGATTGGCTCCGGATTTGCCGGT 4537
>seq204
Length=31295
Score = 123 bits (136), Expect = 3e-22
Identities = 92/108 (85%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| | ||||| || || |||||||||||||||||| | || |||||| |||| ||||||
Sbjct 20771 GCCTCAAACTATCTTGATATCAAGCCTCTGCTCGATGTCGGCTGCAAGACTGTCGCCAAC 20830
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||||||||||||| || ||||| || ||||||||||| || ||||||
Sbjct 20831 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACTTTCAACATC 20878
>seq545
Length=97716
Score = 122 bits (134), Expect = 1e-21
Identities = 214/312 (69%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| || || || |||||||| || | |||||| ||
Sbjct 74772 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGA 74831
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | ||||| ||| | ||| || | ||| | | ||
Sbjct 74832 AGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 74891
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || |||||| |||||| || | ||||| ||||| || ||||| ||||| ||
Sbjct 74892 GATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTC 74951
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| | |||||||| || || || || || || |||| || | || ||
Sbjct 74952 GATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACC 75011
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||| ||||||||||| || | || ||||| |||| | ||||| || ||||||
Sbjct 75012 GGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 75071
Query 1630365 GGCGAGCACGCG 1630376
| ||||||||
Sbjct 75072 TTCAAGCACGCG 75083
>seq579
Length=93229
Score = 111 bits (122), Expect = 2e-18
Identities = 169/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| || || |||||| | ||| |||| | || |||| | |
Sbjct 60487 TCGACGTCGTCCGTAACCGCATCAAAACCTTTGCCCAGAAGAAGGTCACGTTGCCTGCTG 60428
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| || |||||| | || ||||||||||| ||||| | | | || || | |||||||| |
Sbjct 60427 GCCGACACAAGCTTATTATCCTCGACGAAGCCGATTCCATGACCTCAGGCGCCCAGCAAG 60368
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || || ||||| | || ||||||| || |||||||| | || ||||||
Sbjct 60367 CCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTTGCATTTGCATGCAACC 60308
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCC 1574247
|||| | | |||| ||| | ||||| || |||||||||||||||| || |||||
Sbjct 60307 AGTCGAACAAGATCATTGAGCCACTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGCC 60248
Query 1574248 T 1574248
|
Sbjct 60247 T 60247
>seq126
Length=40607
Score = 102 bits (112), Expect = 1e-15
Identities = 171/245 (70%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||| || |||||||||||||| ||||||||||
Sbjct 37808 GCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATG 37867
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | ||| ||| ||| || || | |
Sbjct 37868 TTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA 37927
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||| || |||||||| ||||| || ||| || |||||||||| || |
Sbjct 37928 AGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGT 37987
Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| |||| ||||| | ||| | | ||||| ||||||||| | ||||| || |||
Sbjct 37988 AG-ACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGAT 38046
Query 868930 GATCT 868934
|||||
Sbjct 38047 GATCT 38051
Score = 102 bits (112), Expect = 1e-15
Identities = 180/258 (70%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || || |||||||| || ||||| ||||| || || | | |||| |||
Sbjct 38153 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCC 38212
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
|||||||||||||| ||||| || || || | | || |||| ||| ||| |||||
Sbjct 38213 GAGAAAAAGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAG--GTCGA-- 38268
Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386
|||||||| |||||||||||| |||||||||||||| | | | || |
Sbjct 38269 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 38326
Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||| || || || |||| || | | | || ||||||| |||||||||||
Sbjct 38327 GTGTCAATTGCATTGAACAGGTATGTGC-GCTGTGATGGCTCCTTGATGTAGGTGTCGAT 38385
Query 869446 CAGGAGCGAATAGGTCTC 869463
||| ||||| ||||| ||
Sbjct 38386 CAGCAGCGAGTAGGTTTC 38403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107072481412721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |