Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq243 132 6e-25 seq204 123 3e-22 seq545 122 1e-21 seq579 111 2e-18 seq126 102 1e-15 >seq243 Length=27540 Score = 132 bits (146), Expect = 6e-25 Identities = 266/393 (68%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| ||||||||||| || ||||||||||||||| ||| || || || | Sbjct 5317 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAATCCACCACCCGGCCT 5258 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | || |||| || ||||||||||||||| || ||| || |||| || ||| | | Sbjct 5257 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGTCGGAGACCCGGTCAGAGTTC 5198 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 || | || |||||||| || || || || | || | ||||||| ||| ||| Sbjct 5197 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACAATTCTGTCGGGCTGCGAGTTCGG 5138 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || || || ||| | ||| | | ||| || ||| |||||||||||| || Sbjct 5137 CCGTACTCTAGGCACTCCCATTGCCCTGAGCGTCAACAATGAAGACCAGCGGCCCCGTGA 5078 Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 || | | ||| ||| |||| || |||||||| || || || | ||||||| | Sbjct 5077 CTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACCTACCT 5018 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449 || || ||| |||||||||| ||||| || || |||||| ||| || || || | Sbjct 5017 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGCAGTGCTCGTGAAACTAT 4958 Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||||| || || || ||||| ||||| || Sbjct 4957 TGCGCGCGTGGCTGCTGGTGCGGTGGCCGAAAA 4925 Score = 91.5 bits (100), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || ||| ||||| || || || || ||||||||||| | ||||| || |||||| Sbjct 4684 CACCGGTGGCACTGTCACTTGTGTTATCCGCAACGTGCCCACGGGCCTTGGTGAGCCGGC 4625 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 |||||| ||| | |||||| ||| || || || |||||| ||||| ||| ||||| Sbjct 4624 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 4565 Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 || ||||||||| ||| ||||| ||| Sbjct 4564 CTTTGAGATTGGCTCCGGATTTGCCGGT 4537 >seq204 Length=31295 Score = 123 bits (136), Expect = 3e-22 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | ||||| || || |||||||||||||||||| | || |||||| |||| |||||| Sbjct 20771 GCCTCAAACTATCTTGATATCAAGCCTCTGCTCGATGTCGGCTGCAAGACTGTCGCCAAC 20830 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||| || ||||| || ||||||||||| || |||||| Sbjct 20831 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACTTTCAACATC 20878 >seq545 Length=97716 Score = 122 bits (134), Expect = 1e-21 Identities = 214/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| || || || |||||||| || | |||||| || Sbjct 74772 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGA 74831 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||||| ||| | ||| || | ||| | | || Sbjct 74832 AGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 74891 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || |||||| |||||| || | ||||| ||||| || ||||| ||||| || Sbjct 74892 GATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTC 74951 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| | |||||||| || || || || || || |||| || | || || Sbjct 74952 GATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACC 75011 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| ||||||||||| || | || ||||| |||| | ||||| || |||||| Sbjct 75012 GGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 75071 Query 1630365 GGCGAGCACGCG 1630376 | |||||||| Sbjct 75072 TTCAAGCACGCG 75083 >seq579 Length=93229 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || |||||| | ||| |||| | || |||| | | Sbjct 60487 TCGACGTCGTCCGTAACCGCATCAAAACCTTTGCCCAGAAGAAGGTCACGTTGCCTGCTG 60428 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | || |||||| | || ||||||||||| ||||| | | | || || | |||||||| | Sbjct 60427 GCCGACACAAGCTTATTATCCTCGACGAAGCCGATTCCATGACCTCAGGCGCCCAGCAAG 60368 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||| | || ||||||| || |||||||| | || |||||| Sbjct 60367 CCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTTGCATTTGCATGCAACC 60308 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCC 1574247 |||| | | |||| ||| | ||||| || |||||||||||||||| || ||||| Sbjct 60307 AGTCGAACAAGATCATTGAGCCACTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGCC 60248 Query 1574248 T 1574248 | Sbjct 60247 T 60247 >seq126 Length=40607 Score = 102 bits (112), Expect = 1e-15 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || |||||||||||||| |||||||||| Sbjct 37808 GCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATG 37867 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||| ||| ||| || || | | Sbjct 37868 TTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA 37927 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| || |||||||| ||||| || ||| || |||||||||| || | Sbjct 37928 AGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGT 37987 Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || |||| ||||| | ||| | | ||||| ||||||||| | ||||| || ||| Sbjct 37988 AG-ACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGAT 38046 Query 868930 GATCT 868934 ||||| Sbjct 38047 GATCT 38051 Score = 102 bits (112), Expect = 1e-15 Identities = 180/258 (70%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || || |||||||| || ||||| ||||| || || | | |||| ||| Sbjct 38153 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCC 38212 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 |||||||||||||| ||||| || || || | | || |||| ||| ||| ||||| Sbjct 38213 GAGAAAAAGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAG--GTCGA-- 38268 Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 |||||||| |||||||||||| |||||||||||||| | | | || | Sbjct 38269 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 38326 Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||| || || || |||| || | | | || ||||||| ||||||||||| Sbjct 38327 GTGTCAATTGCATTGAACAGGTATGTGC-GCTGTGATGGCTCCTTGATGTAGGTGTCGAT 38385 Query 869446 CAGGAGCGAATAGGTCTC 869463 ||| ||||| ||||| || Sbjct 38386 CAGCAGCGAGTAGGTTTC 38403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107072481412721