Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq734 100 3e-16
seq357 96.9 3e-15
seq160 82.4 7e-11
seq126 82.4 7e-11
>seq734
Length=84471
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || ||||| || || || ||||| ||||| || || | |
Sbjct 21445 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCG 21386
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || || || || || || ||
Sbjct 21385 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21326
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || || || || || ||||| |||||| | | | | || || || ||
Sbjct 21325 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAAT 21266
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||||||||| || || || |||||||| ||||| |||| || |||
Sbjct 21265 ATTCAAAAGGAGTCTACTCTTCACTTGGTTTTGCGTCTGCGTGGTGGC 21218
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || ||||| || || || ||||| ||||||||||| | ||
Sbjct 21673 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAAGTAGAGTCATCC 21614
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || || || || || || ||
Sbjct 21613 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21554
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || || || || |||||| | | | | || || || |||
Sbjct 21553 CAGCGTCTCATTTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAAC 21494
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || ||||| || || || ||| | || |||||
Sbjct 21493 ATCCAGAAGGAGTCTACTCTTCACCTTGTTTTGCG 21459
>seq357
Length=115873
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || || ||||| || ||||| ||||| || || || |
Sbjct 6062 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 6003
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||| || ||||| || || || ||||| || ||
Sbjct 6002 GGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCA 5943
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || ||||||| || || || |||||||||||| | | | |||| || || ||
Sbjct 5942 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 5883
Query 24883 CATTCAAAAGG 24893
|||||| ||||
Sbjct 5882 CATTCAGAAGG 5872
>seq160
Length=36261
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || ||||| || || || || | | ||||| | || |
Sbjct 3588 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATCGACAAC 3529
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || || || || || || || |||||||||
Sbjct 3528 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTT 3469
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || || ||||| |||||| | | |||| || || ||||| || ||||| ||
Sbjct 3468 GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCC 3409
Query 24899 ACACTACACTTGGTGTTGCG 24918
|| || ||| | || ||||
Sbjct 3408 ACCCTCCACCTTGTCCTGCG 3389
>seq126
Length=40607
Score = 82.4 bits (90), Expect = 7e-11
Identities = 115/160 (72%), Gaps = 6/160 (4%)
Strand=Plus/Minus
Query 126024 GCGCATGGTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAt 126083
|||| |||| ||||||||| || |||||| | |||||||||||| ||| || ||||
Sbjct 38254 GCGCCTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTAT 38195
Query 126084 tttttttATAAAGACAAAG---GGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGAT 126140
||| | | | ||| ||| | ||||| ||||| || ||| |||||| | ||
Sbjct 38194 TTTCTGGCT---GCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTAT 38138
Query 126141 TTCTCGTGACGAAGGACTCCATACGGACTTTGCATGTCTG 126180
||| ||||| || || || || || |||||||| || |||
Sbjct 38137 TTCCCGTGATGAGGGTCTGCACACCGACTTTGCTTGCCTG 38098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449893027915640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |