Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq579 127 3e-23 seq126 125 1e-22 seq545 114 2e-19 seq204 105 1e-16 seq293 95.1 2e-13 >seq579 Length=93229 Score = 127 bits (140), Expect = 3e-23 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255 |||| | ||||| |||||| | || |||||||| || ||||| | | | || || | | Sbjct 60436 TGCCTGCTGGCCGACACAAGCTTATTATCCTCGACGAAGCCGATTCCATGACCTCAGGCG 60377 Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 ||||||| |||||||| || ||||| | ||| ||||||| || || ||||| | | Sbjct 60376 CCCAGCAAGCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTTGCATTTG 60317 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | |||||| |||| | | |||| || | |||||| ||| |||||||| |||||| Sbjct 60316 CATGCAACCAGTCGAACAAGATCATTGAGCCACTCCAGTCCCGATGCGCCATTCTGCGCT 60257 Query 2019376 TTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAA 2019435 || |||||| ||||| | || || ||| || | | | || ||||| ||||||| Sbjct 60256 ATGGGCGCCTTACCGATGAACAAGTCATTAAGCGCCTACTCCAAATCATCGAGGCCGAAA 60197 Query 2019436 AGGTC 2019440 ||||| Sbjct 60196 AGGTC 60192 >seq126 Length=40607 Score = 125 bits (138), Expect = 1e-22 Identities = 180/251 (72%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| || || || || ||| ||| || |||||||||||||| ||||| Sbjct 37802 ACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGC 37861 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 ||||| |||||| | ||| ||||| | | |||| ||||||| || || Sbjct 37862 GAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGA 37921 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | ||||||||||||| || || || |||||||| || ||| || |||||||||| Sbjct 37922 GCAACAAGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATT 37981 Query 794073 CCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || | || |||| |||||| | ||| ||| ||||| ||||||||| | ||||| || Sbjct 37982 CCCAGTAG-ACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTC 38040 Query 794132 GATGATGATCT 794142 ||||||||| Sbjct 38041 AGTGATGATCT 38051 Score = 123 bits (136), Expect = 4e-22 Identities = 207/295 (70%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || |||||||| || ||||| ||||| || || | |||| ||||||||| Sbjct 38159 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAA 38218 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 |||||||| ||||| || || || | || || |||| ||| || || | | ||| Sbjct 38219 AAGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGT--CGA----CTCC 38272 Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553 |||| |||||||||||| ||||| || ||||| | | |||| | ||||| Sbjct 38273 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 38332 Query 794554 ATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 || || || |||| || | || || ||||||| |||||||||||| || || Sbjct 38333 ATTGCATTGAACAGGTATGTGCGCTGTGAT-GGCTCCTTGATGTAGGTGTCGATCAGCAG 38391 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||| || ||||| |||||||| || ||||||||| || || |||||| Sbjct 38392 CGAGTAGGTTTCAGAGTGAATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAG 38446 >seq545 Length=97716 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || || |||| ||| || || || |||||||| |||| |||||| || Sbjct 74772 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGA 74831 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| || | ||||| ||| | ||| || | ||| | | || Sbjct 74832 AGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 74891 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || |||||| |||||| || | ||||| | || || || ||||| ||||| || Sbjct 74892 GATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTC 74951 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| | |||||||| | || || || || || |||| | | || || Sbjct 74952 GATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACC 75011 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||||||| || Sbjct 75012 GGCATTGAAGAGCGTAGG 75029 >seq204 Length=31295 Score = 105 bits (116), Expect = 1e-16 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | ||||| || || |||||||| || |||||| | || |||||||| || |||||| Sbjct 20771 GCCTCAAACTATCTTGATATCAAGCCTCTGCTCGATGTCGGCTGCAAGACTGTCGCCAAC 20830 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | ||||||||||| || ||||| || ||||||||||| || |||||| Sbjct 20831 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACTTTCAACATC 20878 >seq293 Length=23103 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| |||||||||||||| || ||||| |||||| |||| ||||| ||| | | Sbjct 14353 GTACTTGGTCACGGCCTTGGTACCTTCAGAGACAGCGTGCTTGGCAAGTTCACCGGGAAG 14412 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || ||||| |||||||||||| |||| Sbjct 14413 GATAAGACGCACACTGGTCTGGATCTCTCGGG 14444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916159917481907