Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq579 127 3e-23
seq126 125 1e-22
seq545 114 2e-19
seq204 105 1e-16
seq293 95.1 2e-13
>seq579
Length=93229
Score = 127 bits (140), Expect = 3e-23
Identities = 175/245 (71%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255
|||| | ||||| |||||| | || |||||||| || ||||| | | | || || | |
Sbjct 60436 TGCCTGCTGGCCGACACAAGCTTATTATCCTCGACGAAGCCGATTCCATGACCTCAGGCG 60377
Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315
||||||| |||||||| || ||||| | ||| ||||||| || || ||||| | |
Sbjct 60376 CCCAGCAAGCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTTGCATTTG 60317
Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375
| |||||| |||| | | |||| || | |||||| ||| |||||||| ||||||
Sbjct 60316 CATGCAACCAGTCGAACAAGATCATTGAGCCACTCCAGTCCCGATGCGCCATTCTGCGCT 60257
Query 2019376 TTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAA 2019435
|| |||||| ||||| | || || ||| || | | | || ||||| |||||||
Sbjct 60256 ATGGGCGCCTTACCGATGAACAAGTCATTAAGCGCCTACTCCAAATCATCGAGGCCGAAA 60197
Query 2019436 AGGTC 2019440
|||||
Sbjct 60196 AGGTC 60192
>seq126
Length=40607
Score = 125 bits (138), Expect = 1e-22
Identities = 180/251 (72%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
||||| ||||| || || || || ||| ||| || |||||||||||||| |||||
Sbjct 37802 ACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGC 37861
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012
||||| |||||| | ||| ||||| | | |||| ||||||| || ||
Sbjct 37862 GAGATGTTCTCCATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGA 37921
Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072
| ||||||||||||| || || || |||||||| || ||| || ||||||||||
Sbjct 37922 GCAACAAGCAGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATT 37981
Query 794073 CCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
|| | || |||| |||||| | ||| ||| ||||| ||||||||| | ||||| ||
Sbjct 37982 CCCAGTAG-ACCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTC 38040
Query 794132 GATGATGATCT 794142
|||||||||
Sbjct 38041 AGTGATGATCT 38051
Score = 123 bits (136), Expect = 4e-22
Identities = 207/295 (70%), Gaps = 11/295 (4%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| || |||||||| || ||||| ||||| || || | |||| |||||||||
Sbjct 38159 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAA 38218
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
|||||||| ||||| || || || | || || |||| ||| || || | | |||
Sbjct 38219 AAGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGT--CGA----CTCC 38272
Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553
|||| |||||||||||| ||||| || ||||| | | |||| | |||||
Sbjct 38273 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 38332
Query 794554 ATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612
|| || || |||| || | || || ||||||| |||||||||||| || ||
Sbjct 38333 ATTGCATTGAACAGGTATGTGCGCTGTGAT-GGCTCCTTGATGTAGGTGTCGATCAGCAG 38391
Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
||||||||| || ||||| |||||||| || ||||||||| || || ||||||
Sbjct 38392 CGAGTAGGTTTCAGAGTGAATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAG 38446
>seq545
Length=97716
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| ||||| || || |||| ||| || || || |||||||| |||| |||||| ||
Sbjct 74772 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGA 74831
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| || | ||||| ||| | ||| || | ||| | | ||
Sbjct 74832 AGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 74891
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || |||||| |||||| || | ||||| | || || || ||||| ||||| ||
Sbjct 74892 GATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTC 74951
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| | |||||||| | || || || || || |||| | | || ||
Sbjct 74952 GATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACC 75011
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||||||||||||||| ||
Sbjct 75012 GGCATTGAAGAGCGTAGG 75029
>seq204
Length=31295
Score = 105 bits (116), Expect = 1e-16
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | ||||| || || |||||||| || |||||| | || |||||||| || ||||||
Sbjct 20771 GCCTCAAACTATCTTGATATCAAGCCTCTGCTCGATGTCGGCTGCAAGACTGTCGCCAAC 20830
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
| ||||||||||| || ||||| || ||||||||||| || ||||||
Sbjct 20831 ATGATCAAGGGCAAATCTCCCGAAGAAATCCGCAAGACTTTCAACATC 20878
>seq293
Length=23103
Score = 95.1 bits (104), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| |||||||||||||| || ||||| |||||| |||| ||||| ||| | |
Sbjct 14353 GTACTTGGTCACGGCCTTGGTACCTTCAGAGACAGCGTGCTTGGCAAGTTCACCGGGAAG 14412
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| || ||||| |||||||||||| ||||
Sbjct 14413 GATAAGACGCACACTGGTCTGGATCTCTCGGG 14444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916159917481907
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |