Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq357 118 7e-22
seq734 116 2e-21
seq160 116 2e-21
>seq357
Length=115873
Score = 118 bits (130), Expect = 7e-22
Identities = 144/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || |||||||
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 5988
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 5989 -TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 6047
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 6048 ACGAAAATCTGCAT 6061
>seq734
Length=84471
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|| ||||||| || ||||||||| ||||| ||||| |||||| |||| |||| ||
Sbjct 21465 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 21524
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
||||||||||| || || || || || |||||||| | || | ||||||||||| |
Sbjct 21525 AGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21584
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || |||||| | || | || | ||| || || | ||| |||||||||
Sbjct 21585 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTT 21644
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || ||||| |||||
Sbjct 21645 CCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || |||||| ||||| || ||||| |||||| |||| |||| ||
Sbjct 21237 ACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCA 21296
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|| |||||||| ||||| || || || |||||||| | || | ||||||||||| |
Sbjct 21297 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21356
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || |||||| | || | || | ||| || || | ||| |||||||||
Sbjct 21357 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTT 21416
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || ||||| |||||
Sbjct 21417 CCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
>seq160
Length=36261
Score = 116 bits (128), Expect = 2e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 3391 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 3450
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||||| || |||||||| | || | |||||||||||
Sbjct 3451 CTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 3510
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | |||| || | |||||| || | ||| |||||
Sbjct 3511 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 3570
Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968
||| ||||| |||||||| || ||
Sbjct 3571 CTTACCCGTCAGGGTCTTGACGAA 3594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325689572893247
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |