Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq734 111 3e-19 seq160 86.0 1e-11 >seq734 Length=84471 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| | ||| |||||||| || ||||| || || || || | Sbjct 21445 TACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 21504 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || || || ||||| ||||||||||| || || | || || || || | Sbjct 21505 ATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGG 21564 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || || || ||||| ||||| | |||| Sbjct 21565 GAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTA 21624 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || || | ||||| || || || ||||| Sbjct 21625 CTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 Score = 107 bits (118), Expect = 4e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| | ||| ||||||||||||||||| ||||| || || | Sbjct 21673 TACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGG 21732 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | || || || || || |||||||| || || || | || || || || | Sbjct 21733 ATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGG 21792 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || || || ||||| ||||| || || | Sbjct 21793 GAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCA 21852 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 | || | || || |||||||| |||| Sbjct 21853 CCTCGAGGGTAATGGTCTTGCCAGTCA 21879 >seq160 Length=36261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | ||| || || || || ||||| || || || || | Sbjct 3375 TACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3434 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||||||||| | | || || || || | Sbjct 3435 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGG 3494 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || || || || ||||| || || || | Sbjct 3495 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGA 3554 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 | |||| || || ||||| || |||| ||||| || || Sbjct 3555 CCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816972735607