Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq545 203 3e-47 seq126 131 2e-25 seq734 111 2e-19 seq357 104 2e-17 seq160 104 2e-17 >seq545 Length=97716 Score = 203 bits (224), Expect = 3e-47 Identities = 1106/1743 (63%), Gaps = 53/1743 (3%) Strand=Plus/Plus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTTTATCTTCATC 148118 ||||||||||| || ||||||||||| ||||||| | | | |||| ||| Sbjct 73522 TGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGTACAACTGTACGCTGGGAA---ATC 73578 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| ||||||||||||| || |||| | ||||||| | ||| ||| | Sbjct 73579 TCCCAAACCGTCTTGTACAGAGCTTTAATATCAGGAGGAATGCTGGAAATGTTCTGAATG 73638 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 |||||| || |||| ||| |||| ||| | ||| | |||| || |||| | Sbjct 73639 GAGCCGTTGTCGGCAATAATGCGATTCTTCATATTGTCAGACCATAGACCAAGATCGACC 73698 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 |||||| | || | | || || ||||| |||||||| || || ||||| ||| | Sbjct 73699 AGGTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGG 73758 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | |||| ||| | |||||||| |||| |||||||| | |||||| | || | Sbjct 73759 TAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTG 73818 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || || |||||| || || || || || ||||| | ||| | | ||| || || | Sbjct 73819 GCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 73878 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACTGCA 148476 ||||||| | ||| ||||| | || || || ||||| | |||||| || |||||| Sbjct 73879 TTCAGAGAAGTCCAATCCCACA--GGTCACTGGGAGTCACATCCCACATATCAAACTGCA 73936 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 | ||||| || | || ||||| || | ||| | || | | | || | Sbjct 73937 GGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGA 73996 Query 148537 GTTCGCAGC-TCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC 148595 ||| || | || || || ||| ||| || || || |||||| |||||||| Sbjct 73997 TTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGC 74055 Query 148596 AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCC 148655 | || | || | ||||| || || | || ||||| || || ||| Sbjct 74056 TGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCC 74115 Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA 148715 || || || ||||||||||| || || |||||| | | | || || | ||| Sbjct 74116 TGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGA 74175 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGC 148775 |||||||| || ||||| || || || || || || |||| || | | | | Sbjct 74176 TAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGT 74235 Query 148776 AGCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCGGTTCACGGCGATA 148826 ||| || ||| || ||| |||| || |||| | | | | ||||| | Sbjct 74236 AGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGG---AAGGGCGAGA 74292 Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 || ||||| |||||||| || |||||| ||||| | ||||| | ||||| | ||| Sbjct 74293 GATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCAT 74352 Query 148887 AGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || || ||||| || | || | || || ||||||||||||| |||||| | Sbjct 74353 AGGTTAGAGCTGCGAATGGT---ACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGG 74409 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGAT 149001 || ||||| |||||| | || ||||||||| ||| | ||||| ||| | | | Sbjct 74410 TCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCA- 74468 Query 149002 GCAGGTCCTGCGCGCGCACTTGC-TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATAC 149060 ||| | ||| || || | ||| ||||||||||| ||| || |||| Sbjct 74469 -CAGCTTCTGGGCCTTGACAACCATGC-GACCGCGACCCTCCTTCTCATACTTTTCATAC 74526 Query 149061 AGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATG 149120 || ||| ||| | ||||| ||||| || | | || ||||| | | ||||||||| Sbjct 74527 AGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATG 74586 Query 149121 AGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCG 149180 |||| ||| | | | | | || |||||||| ||||| || | |||||| || Sbjct 74587 AGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCC 74646 Query 149181 TACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240 | | ||||| || || | ||||| || ||| ||| |||| ||| | Sbjct 74647 AAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAAC 74706 Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG--- 149297 || | || || ||||| ||||| | ||| | || | || || |||||| Sbjct 74707 TCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTT 74766 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 || |||||||| || | || | ||||||| || || || | ||| || ||||||| Sbjct 74767 CCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826 Query 149358 CTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416 | | ||| |||||||| ||| |||| ||| || || | ||| || || Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGC-AATGTAGGAGCCAGTGGCACGAATACGGTGAACATT 74885 Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGA 149475 || ||||| || ||| | ||| || || |||| |||| ||| || ||| | Sbjct 74886 GAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTC-TTGAGGGTATCGTAAA 74944 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCACGAGCACATTTGCGGAAAA 149534 |||| ||||| ||||| ||||| |||| | || || || || ||| |||| Sbjct 74945 TGCCTTCGATACTGTCATCTTTCAT-GTCAACTAGGAAACATGAAGACAACTGCGCCTGG 75003 Query 149535 CGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCAT 149593 | || ||||| ||| | || || ||||| || || | || || | ||| | Sbjct 75004 GGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG-ACATAAG 75062 Query 149594 CTCGTACGACTCGAGCACGCGGTCCA---TGTCATCGCCATGGATGCCTATGGCGACGCG 149650 | ||| | || |||||||| || | ||||| | ||| || || | || || || Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCA-CCCCA--AATACCCACAGCAACACG 75119 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT 149710 ||| | ||| ||||| || || || | | ||| ||| |||||||| || Sbjct 75120 CATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGAACG 75179 Query 149711 TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGC 149770 || || |||||| |||||||||||| ||||| ||||| || ||| | ||||| | Sbjct 75180 CTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 75239 Query 149771 GTC 149773 ||| Sbjct 75240 GTC 75242 >seq126 Length=40607 Score = 131 bits (144), Expect = 2e-25 Identities = 352/526 (67%), Gaps = 23/526 (4%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || |||||||| ||||| || ||||| | | ||| ||||| | Sbjct 37813 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTC 37872 Query 120411 CATAAACTCGAACGGGTTGCTCGC--GTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| ||||| | || | |||| | ||| | ||| | || ||| Sbjct 37873 CATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCG--TTGCCTAGAGCAACAAGC 37930 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || ||||| || |||||||||||||| | ||| | |||||||| ||||| | Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990 Query 120529 GCCACCGG-CAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 |||| || || ||| ||||| ||||||||||| || | || || || ||| || Sbjct 37991 -CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGAT 38049 Query 120588 GGCGAGCATAGTGTG---GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCA 120644 ||| || || ||| |||| | | || | | | | |||||| Sbjct 38050 CTTTTGCACGAGGTCCTTGCTGGGGCGGTTGT-TCAGGTGTGAGAACAG-----CAGGCA 38103 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 |||||||| |||||||| ||||| || || || || |||||||| || ||||| || Sbjct 38104 AGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACC 38163 Query 120705 GGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGC-AAAGCTGCCCGAAAAGA 120760 ||||||| || || |||| | |||| || | ||| ||||| ||||| || | Sbjct 38164 AGGCATGAGACCA--CG-CTTGCGCAGCCAGAAAATAGAGGCGAAAGCA-CCCGAGAAAA 38219 Query 120761 ACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT 120820 | | ||| || || || || || |||| ||||| ||| || |||| | |||| | Sbjct 38220 AGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGTCGACTCCTTGTCGG 38279 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||||||||||| ||||| |||||||| ||| | ||| || || Sbjct 38280 TGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAAT 38325 >seq734 Length=84471 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| ||| | ||| | | | ||||| |||||||| || Sbjct 21249 GTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 21307 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || || || || |||||||| |||||| ||| Sbjct 21308 AGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21367 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | |||||| |||| ||| | ||| || || || ||||| Sbjct 21368 GACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGT 21427 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 21428 CTTGACGAAGATTTGCAT 21445 Score = 104 bits (114), Expect = 2e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| |||||||| ||| | ||| | | | ||||| |||||||| || Sbjct 21705 GTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 21763 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| || || || || |||||||| |||||| ||| Sbjct 21764 AGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21823 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | |||| || || | | |||||| |||| ||| | ||| ||||| |||| Sbjct 21824 GACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTGCCAGTCA 21879 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||| || ||||| || Sbjct 21477 GTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGTTGCTTTCC 21535 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| ||||||||||| || || || || |||||||| |||||| ||| Sbjct 21536 AGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21595 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || |||| | ||| || |||| ||| | ||| || || || ||||| Sbjct 21596 GACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGT 21655 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 21656 CTTGACGAAGATTTGCAT 21673 >seq357 Length=115873 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| ||||| ||||| |||||| Sbjct 5907 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 5966 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | ||||| | || ||| || |||| ||| | Sbjct 5967 TCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATC 6026 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 6027 GTCTTACCCGTAAGGGTCTTGACGAAAATCTGCAT 6061 >seq160 Length=36261 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | ||||| |||||||||| Sbjct 3406 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGC 3464 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 3465 CAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 3524 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | ||| || || | ||| | ||| || || ||||| | Sbjct 3525 TGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 3584 Query 133642 TTTTTACGAAA 133652 | || |||||| Sbjct 3585 TCTTGACGAAA 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415887236120