Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq545 203 3e-47
seq126 131 2e-25
seq734 111 2e-19
seq357 104 2e-17
seq160 104 2e-17
>seq545
Length=97716
Score = 203 bits (224), Expect = 3e-47
Identities = 1106/1743 (63%), Gaps = 53/1743 (3%)
Strand=Plus/Plus
Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTTTATCTTCATC 148118
||||||||||| || ||||||||||| ||||||| | | | |||| |||
Sbjct 73522 TGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGTACAACTGTACGCTGGGAA---ATC 73578
Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178
||||| ||||||||||||| || |||| | ||||||| | ||| ||| |
Sbjct 73579 TCCCAAACCGTCTTGTACAGAGCTTTAATATCAGGAGGAATGCTGGAAATGTTCTGAATG 73638
Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238
|||||| || |||| ||| |||| ||| | ||| | |||| || |||| |
Sbjct 73639 GAGCCGTTGTCGGCAATAATGCGATTCTTCATATTGTCAGACCATAGACCAAGATCGACC 73698
Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298
|||||| | || | | || || ||||| |||||||| || || ||||| ||| |
Sbjct 73699 AGGTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGG 73758
Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358
|| | |||| ||| | |||||||| |||| |||||||| | |||||| | || |
Sbjct 73759 TAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTG 73818
Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418
|| || |||||| || || || || || ||||| | ||| | | ||| || || |
Sbjct 73819 GCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 73878
Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACTGCA 148476
||||||| | ||| ||||| | || || || ||||| | |||||| || ||||||
Sbjct 73879 TTCAGAGAAGTCCAATCCCACA--GGTCACTGGGAGTCACATCCCACATATCAAACTGCA 73936
Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536
| ||||| || | || ||||| || | ||| | || | | | || |
Sbjct 73937 GGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGA 73996
Query 148537 GTTCGCAGC-TCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC 148595
||| || | || || || ||| ||| || || || |||||| ||||||||
Sbjct 73997 TTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGC 74055
Query 148596 AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCC 148655
| || | || | ||||| || || | || ||||| || || |||
Sbjct 74056 TGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCC 74115
Query 148656 TGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA 148715
|| || || ||||||||||| || || |||||| | | | || || | |||
Sbjct 74116 TGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGA 74175
Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGC 148775
|||||||| || ||||| || || || || || || |||| || | | | |
Sbjct 74176 TAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGT 74235
Query 148776 AGCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCGGTTCACGGCGATA 148826
||| || ||| || ||| |||| || |||| | | | | ||||| |
Sbjct 74236 AGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGG---AAGGGCGAGA 74292
Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886
|| ||||| |||||||| || |||||| ||||| | ||||| | ||||| | |||
Sbjct 74293 GATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCAT 74352
Query 148887 AGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943
|| || ||||| || | || | || || ||||||||||||| |||||| |
Sbjct 74353 AGGTTAGAGCTGCGAATGGT---ACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGG 74409
Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGAT 149001
|| ||||| |||||| | || ||||||||| ||| | ||||| ||| | | |
Sbjct 74410 TCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCA- 74468
Query 149002 GCAGGTCCTGCGCGCGCACTTGC-TGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATAC 149060
||| | ||| || || | ||| ||||||||||| ||| || ||||
Sbjct 74469 -CAGCTTCTGGGCCTTGACAACCATGC-GACCGCGACCCTCCTTCTCATACTTTTCATAC 74526
Query 149061 AGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATG 149120
|| ||| ||| | ||||| ||||| || | | || ||||| | | |||||||||
Sbjct 74527 AGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATG 74586
Query 149121 AGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCG 149180
|||| ||| | | | | | || |||||||| ||||| || | |||||| ||
Sbjct 74587 AGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCC 74646
Query 149181 TACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACG 149240
| | ||||| || || | ||||| || ||| ||| |||| ||| |
Sbjct 74647 AAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAAC 74706
Query 149241 CTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG--- 149297
|| | || || ||||| ||||| | ||| | || | || || ||||||
Sbjct 74707 TCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTT 74766
Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357
|| |||||||| || | || | ||||||| || || || | ||| || |||||||
Sbjct 74767 CCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCG 74826
Query 149358 CTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416
| | ||| |||||||| ||| |||| ||| || || | ||| || ||
Sbjct 74827 TTCGAAGTACCGTTAGTGCCAGC-AATGTAGGAGCCAGTGGCACGAATACGGTGAACATT 74885
Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGA 149475
|| ||||| || ||| | ||| || || |||| |||| ||| || ||| |
Sbjct 74886 GAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTC-TTGAGGGTATCGTAAA 74944
Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGC-AGAAAGCACGAGCACATTTGCGGAAAA 149534
|||| ||||| ||||| ||||| |||| | || || || || ||| ||||
Sbjct 74945 TGCCTTCGATACTGTCATCTTTCAT-GTCAACTAGGAAACATGAAGACAACTGCGCCTGG 75003
Query 149535 CGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCAT 149593
| || ||||| ||| | || || ||||| || || | || || | ||| |
Sbjct 75004 GGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG-ACATAAG 75062
Query 149594 CTCGTACGACTCGAGCACGCGGTCCA---TGTCATCGCCATGGATGCCTATGGCGACGCG 149650
| ||| | || |||||||| || | ||||| | ||| || || | || || ||
Sbjct 75063 GTTGTAGGTTTCAAGCACGCGTTCGACTTTGTCA-CCCCA--AATACCCACAGCAACACG 75119
Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT 149710
||| | ||| ||||| || || || | | ||| ||| |||||||| ||
Sbjct 75120 CATTATCATGTGCTGGGGACGTTCAACGATCTTGCCGTCAAGTTTGAGCAGATACGAACG 75179
Query 149711 TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGC 149770
|| || |||||| |||||||||||| ||||| ||||| || ||| | ||||| |
Sbjct 75180 CTCGAGCGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 75239
Query 149771 GTC 149773
|||
Sbjct 75240 GTC 75242
>seq126
Length=40607
Score = 131 bits (144), Expect = 2e-25
Identities = 352/526 (67%), Gaps = 23/526 (4%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || ||||| || |||||||| ||||| || ||||| | | ||| ||||| |
Sbjct 37813 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTC 37872
Query 120411 CATAAACTCGAACGGGTTGCTCGC--GTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468
||| || ||||| ||||| | || | |||| | ||| | ||| | || |||
Sbjct 37873 CATGAAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCG--TTGCCTAGAGCAACAAGC 37930
Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528
|| ||||| || |||||||||||||| | ||| | |||||||| ||||| |
Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990
Query 120529 GCCACCGG-CAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587
|||| || || ||| ||||| ||||||||||| || | || || || ||| ||
Sbjct 37991 -CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGAT 38049
Query 120588 GGCGAGCATAGTGTG---GCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCA 120644
||| || || ||| |||| | | || | | | | ||||||
Sbjct 38050 CTTTTGCACGAGGTCCTTGCTGGGGCGGTTGT-TCAGGTGTGAGAACAG-----CAGGCA 38103
Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704
|||||||| |||||||| ||||| || || || || |||||||| || ||||| ||
Sbjct 38104 AGCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACC 38163
Query 120705 GGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGC-AAAGCTGCCCGAAAAGA 120760
||||||| || || |||| | |||| || | ||| ||||| ||||| || |
Sbjct 38164 AGGCATGAGACCA--CG-CTTGCGCAGCCAGAAAATAGAGGCGAAAGCA-CCCGAGAAAA 38219
Query 120761 ACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT 120820
| | ||| || || || || || |||| ||||| ||| || |||| | |||| |
Sbjct 38220 AGATGCCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGTCGACTCCTTGTCGG 38279
Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
||||||||||| ||||| |||||||| ||| | ||| || ||
Sbjct 38280 TGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAAT 38325
>seq734
Length=84471
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| || || |||||||| ||| | ||| | | | ||||| |||||||| ||
Sbjct 21249 GTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 21307
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| ||||||||||| || || || || |||||||| |||||| |||
Sbjct 21308 AGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21367
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || || | | |||||| |||| ||| | ||| || || || |||||
Sbjct 21368 GACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGT 21427
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 21428 CTTGACGAAGATTTGCAT 21445
Score = 104 bits (114), Expect = 2e-17
Identities = 130/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || |||||||| |||||||| ||| | ||| | | | ||||| |||||||| ||
Sbjct 21705 GTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 21763
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| ||||||||||| || || || || |||||||| |||||| |||
Sbjct 21764 AGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21823
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
|| | |||| || || | | |||||| |||| ||| | ||| ||||| ||||
Sbjct 21824 GACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTGCCAGTCA 21879
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | ||| | | | ||||| || ||||| ||
Sbjct 21477 GTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCA-TCCTCAAGTTGCTTTCC 21535
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| ||||||| ||||||||||| || || || || |||||||| |||||| |||
Sbjct 21536 AGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 21595
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || |||| | ||| || |||| ||| | ||| || || || |||||
Sbjct 21596 GACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGT 21655
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 21656 CTTGACGAAGATTTGCAT 21673
>seq357
Length=115873
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || || ||||||||||| ||||| ||||| ||||||
Sbjct 5907 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 5966
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | || | ||||| | || ||| || |||| ||| |
Sbjct 5967 TCCTGAATCTTGGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATC 6026
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || || || || ||||||||||||||
Sbjct 6027 GTCTTACCCGTAAGGGTCTTGACGAAAATCTGCAT 6061
>seq160
Length=36261
Score = 104 bits (114), Expect = 2e-17
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| || ||| | | | ||||| ||||||||||
Sbjct 3406 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGC 3464
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | ||||||||||| || || ||||| |||||||| |||||| ||
Sbjct 3465 CAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 3524
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | |||||| | | ||| || || | ||| | ||| || || ||||| |
Sbjct 3525 TGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 3584
Query 133642 TTTTTACGAAA 133652
| || ||||||
Sbjct 3585 TCTTGACGAAA 3595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483415887236120
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