Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq126 208 1e-47
seq579 93.3 6e-13
>seq126
Length=40607
Score = 208 bits (230), Expect = 1e-47
Identities = 361/513 (70%), Gaps = 24/513 (5%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| ||||||||||| ||||| || |||||| | || |
Sbjct 38659 GATTTGGCAGATGTAC-AAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 38601
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| ||| ||| | | ||||||| | |||
Sbjct 38600 TCTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGAACAAGGACGAGCAGTACTTC 38545
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | || ||||| || ||||||| |||||||| || ||| ||||| |
Sbjct 38544 ATCTCCCACATTCTTGCCTTCTT-CGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGT 38486
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| ||||| | ||||| || | || ||||| || | || ||||| ||||||||
Sbjct 38485 TGAGCGCTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 38426
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || |||||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 38425 CATGATGGAAAACATTCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGA 38366
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126
|| || | || |||| || || || ||||| | || | | | |
Sbjct 38365 GCC-ATCACAGCGCACATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCA 38307
Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183
||||||||||||| |||||||||||| |||||||| ||||| ||| ||| ||||
Sbjct 38306 AGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGAC-CTTCGCCCAGCG 38252
Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242
|| || | || || || ||||| ||||||||||||||||| |||| | | || ||
Sbjct 38251 CCTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTT 38192
Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||| ||||| || |||||||| |||||
Sbjct 38191 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 38159
Score = 107 bits (118), Expect = 3e-17
Identities = 181/254 (71%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCG-GTG 1456579
|||||||| || ||||| | ||||||||| ||||| ||| ||| | ||||| |||
Sbjct 38051 AGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGTG 37992
Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
| || | || ||||||||| || ||| || |||||||| ||| || || ||||
Sbjct 37991 GT-CTACTGGGAATGAACGCCGAT-CTGATGAAGCAATACATTGAGTTT-GTTGCTGACC 37935
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
||||||| | || || ||| || ||||| ||||| | | ||||| ||| |
Sbjct 37934 GCCTGCTTGTTGCTCTAGGCAACG-AGAAGGTTTACCGTGCCACGAACCCCTTCGACTTC 37876
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTAC 1456758
|||||| |||||||||| |||||||||||||| || ||| || || || || |||
Sbjct 37875 ATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTAC 37816
Query 1456759 GCCAAGGCCGGCGT 1456772
|||||||||||
Sbjct 37815 CAGAAGGCCGGCGT 37802
>seq579
Length=93229
Score = 93.3 bits (102), Expect = 6e-13
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869
||||||||||| ||| || | | | ||||| || ||| | || || ||||||
Sbjct 60193 ACCTTTTCGGCCTCGATGATTTGGAGTAGGCGCTTAATGACTTGTTCATCGGTAAGGCGC 60252
Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929
|| ||||||| ||||| || ||| ||| || | ||| |||| | | |||| ||||
Sbjct 60253 CCATAGCGCAGAATGGCGCATCGGGACTGGAGTGGCTCAATGATCTTGTTCGACTGGTTG 60312
Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989
|| || | ||||| || || || |||| | | ||||| || |||||||| ||
Sbjct 60313 CATGCAAATGCAAAGCGTGTAGTGTTGGAGTAGATCTCCATAGTTCTGCGGAGGGCTTGC 60372
Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045
||||| | | || | | | ||||| ||||||||||| || | |||||| || ||
Sbjct 60373 TGGGCGCCTGAGGTCATGGAATCGGCTTCGTCGAGGATAATAAGCTTGTGTCGGCC 60428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177732784655706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |