Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq126 208 1e-47 seq579 93.3 6e-13 >seq126 Length=40607 Score = 208 bits (230), Expect = 1e-47 Identities = 361/513 (70%), Gaps = 24/513 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| ||||||||||| ||||| || |||||| | || | Sbjct 38659 GATTTGGCAGATGTAC-AAGAAGGCTGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 38601 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | | ||||||| | ||| Sbjct 38600 TCTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGAACAAGGACGAGCAGTACTTC 38545 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| || ||||||| |||||||| || ||| ||||| | Sbjct 38544 ATCTCCCACATTCTTGCCTTCTT-CGCCGCCTCTGATGGCATTGTCAACGAAAACCTCGT 38486 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | ||||| || | || ||||| || | || ||||| |||||||| Sbjct 38485 TGAGCGCTTCTCGGGCGAGGTTCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 38426 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || |||||||| |||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 38425 CATGATGGAAAACATTCACTCTGAAACCTACTCGCTGCTGATCGACACCTACATCAAGGA 38366 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || || | || |||| || || || ||||| | || | | | | Sbjct 38365 GCC-ATCACAGCGCACATACCTGTTCAATGCAATTGACACTATTCCCTGCATCCGCCGCA 38307 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 ||||||||||||| |||||||||||| |||||||| ||||| ||| ||| |||| Sbjct 38306 AGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGAC-CTTCGCCCAGCG 38252 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || || | || || || ||||| ||||||||||||||||| |||| | | || || Sbjct 38251 CCTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTT 38192 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || |||||||| ||||| Sbjct 38191 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 38159 Score = 107 bits (118), Expect = 3e-17 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCG-GTG 1456579 |||||||| || ||||| | ||||||||| ||||| ||| ||| | ||||| ||| Sbjct 38051 AGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTGCCCTGTG 37992 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 | || | || ||||||||| || ||| || |||||||| ||| || || |||| Sbjct 37991 GT-CTACTGGGAATGAACGCCGAT-CTGATGAAGCAATACATTGAGTTT-GTTGCTGACC 37935 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 ||||||| | || || ||| || ||||| ||||| | | ||||| ||| | Sbjct 37934 GCCTGCTTGTTGCTCTAGGCAACG-AGAAGGTTTACCGTGCCACGAACCCCTTCGACTTC 37876 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTAC 1456758 |||||| |||||||||| |||||||||||||| || ||| || || || || ||| Sbjct 37875 ATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTAC 37816 Query 1456759 GCCAAGGCCGGCGT 1456772 ||||||||||| Sbjct 37815 CAGAAGGCCGGCGT 37802 >seq579 Length=93229 Score = 93.3 bits (102), Expect = 6e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||||||||| ||| || | | | ||||| || ||| | || || |||||| Sbjct 60193 ACCTTTTCGGCCTCGATGATTTGGAGTAGGCGCTTAATGACTTGTTCATCGGTAAGGCGC 60252 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 || ||||||| ||||| || ||| ||| || | ||| |||| | | |||| |||| Sbjct 60253 CCATAGCGCAGAATGGCGCATCGGGACTGGAGTGGCTCAATGATCTTGTTCGACTGGTTG 60312 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 || || | ||||| || || || |||| | | ||||| || |||||||| || Sbjct 60313 CATGCAAATGCAAAGCGTGTAGTGTTGGAGTAGATCTCCATAGTTCTGCGGAGGGCTTGC 60372 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||||| | | || | | | ||||| ||||||||||| || | |||||| || || Sbjct 60373 TGGGCGCCTGAGGTCATGGAATCGGCTTCGTCGAGGATAATAAGCTTGTGTCGGCC 60428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177732784655706