Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq734 123 3e-23 seq160 113 5e-20 seq357 107 2e-18 >seq734 Length=84471 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||||||||| ||||||||| | |||| | Sbjct 21228 AGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGG 21287 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || ||||| | ||||||||| || || || || || || Sbjct 21288 CCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCC 21347 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | || || || || ||||| ||||| ||| Sbjct 21348 TTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTA 21407 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || |||| ||| || ||||| |||||||| Sbjct 21408 ATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || ||||| || || || ||||| || |||||||||||| | |||| | Sbjct 21456 AGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGG 21515 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || || || |||||||| | ||||||||| || || || || || || Sbjct 21516 CCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCC 21575 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | || ||||| || || || ||||| ||| Sbjct 21576 TTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTA 21635 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || |||| ||| || ||||| |||||||| Sbjct 21636 ATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 >seq160 Length=36261 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||| ||||| || |||||||||||| | ||| | Sbjct 3386 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 3445 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| ||||| |||||||| || || || ||||| || Sbjct 3446 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCC 3505 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || || || ||| Sbjct 3506 TTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTA 3565 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 ||||| ||||| || | || || |||||| Sbjct 3566 ATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595 >seq357 Length=115873 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| |||||||||||||| | |||| | || || ||||| ||||| || || | Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || || || ||||| || || || ||||| || ||||| || Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| ||||| || ||||| || | || || |||| Sbjct 5992 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6051 Query 134704 AAATTTGCATTTTG 134717 |||| ||||| ||| Sbjct 6052 AAATCTGCATCTTG 6065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393263888760