Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq545 188 1e-42
>seq545
Length=97716
Score = 188 bits (208), Expect = 1e-42
Identities = 520/796 (65%), Gaps = 6/796 (1%)
Strand=Plus/Plus
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327
|| || | ||||||||| || || || || ||||||| || ||| | || |||
Sbjct 74284 AGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATC 74343
Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387
|| || ||||| ||| | || || || ||||||| |||||| ||||| |||
Sbjct 74344 TCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG 74403
Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447
||| ||| |||||||| || || || | ||||||||| |||| | ||| | ||| |
Sbjct 74404 CAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCA 74463
Query 69448 TTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATATTGT 69504
| ||| | | || || | || | || || | ||| || ||||| | |
Sbjct 74464 TACCACAGCTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCATACTTT 74520
Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564
||| || || || || || || | || |||| || || |||||||| ||
Sbjct 74521 TCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGG 74580
Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624
||||| | | ||| | |||| | || ||| || ||||| || || || |||||
Sbjct 74581 CACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAG 74640
Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684
|| || | ||| || || | | | |||||| ||||| || || || |||
Sbjct 74641 AGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCG 74700
Query 69685 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGT 69744
|| ||||| | | ||||| ||||||||| || || || || || | | |||| |||||
Sbjct 74701 AGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGC 74760
Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804
|| ||||| ||||| || | || | ||| ||||| || | || | |||||| |||| |
Sbjct 74761 TTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACA 74820
Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864
|| || || || |||| || || |||| ||| || || | || |||||| |
Sbjct 74821 ATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGA 74880
Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924
| | ||||| || || || ||||| || || || | || ||| || | || ||
Sbjct 74881 ACATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCG 74940
Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 69984
|| || || || || || |||||| |||||| || || ||||| ||||| ||
Sbjct 74941 TAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCC 75000
Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044
|| ||| || ||||| || | ||||| |||||||||||||| | || ||| |
Sbjct 75001 TGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATA 75060
Query 70045 AGATTGTATGTTTCAA 70060
|| ||||| |||||||
Sbjct 75061 AGGTTGTAGGTTTCAA 75076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686901819289320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |