Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq734 120 3e-22
>seq734
Length=84471
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| || |||| ||||| ||||| || | ||||| || ||||||||||||||||||
Sbjct 21218 GCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGA 21277
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | |||| | || || ||||| || || ||| ||||||||||||| || ||||| ||
Sbjct 21278 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21337
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| || || ||||||| || | | | || | || || | | || ||
Sbjct 21338 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21397
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | || || || ||||| || || ||||||||||||
Sbjct 21398 CTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCATA 21446
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || | || | ||||| || || || || ||||||||| | | |||| |
Sbjct 21459 CGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCA 21518
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| || || || || || || ||||||||||||| || ||||| || | |||||| ||
Sbjct 21519 TCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 21578
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | | || | || || | | || ||||| || || ||
Sbjct 21579 TCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATG 21638
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || || ||||| || || ||||||||||||
Sbjct 21639 GTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCATA 21674
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || | || | ||||| ||||| || |||||||||||| | | |||| |
Sbjct 21687 CGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCA 21746
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| || ||||| || || ||| ||||||||||||| || ||||| || | |||||| ||
Sbjct 21747 TCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 21806
Query 27153 TCGGCGATCTTG 27164
|| |||||||
Sbjct 21807 TCCTGGATCTTG 21818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424930189564056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |