Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq545 165 1e-35
seq126 123 3e-23
>seq545
Length=97716
Score = 165 bits (182), Expect = 1e-35
Identities = 833/1304 (64%), Gaps = 35/1304 (3%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| ||||||||||| ||||| || || | || |||| |||
Sbjct 73757 GGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGC 73816
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
|||||| ||||| ||||| | | |||| || || | ||| | || || || |
Sbjct 73817 TGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCT 73876
Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||| ||| | ||| || | | | | || || |||| | ||||||| ||||||||
Sbjct 73877 CCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGGAGTCACAT-CCCACATATCAAACTG 73934
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
|| | |||||||| | |||||||||||| ||||| || | ||| | || | ||
Sbjct 73935 CAGGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGC 73994
Query 110944 CAATTCACAGCTC-GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002
| ||| || | || ||| | ||||| || ||||||||||| || | || |
Sbjct 73995 GATTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGA 74053
Query 111003 TCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGC 111057
|| |||||| || ||||| ||||||| | || || | || ||
Sbjct 74054 GCTGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGC-----AAGGAAGGCGTCAGC 74108
Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117
||||| || ||||| | ||||| || | || ||||| || || | || ||
Sbjct 74109 CAGACCCTGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTG 74168
Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177
|| ||||| || ||||||| ||||| || ||| ||||| || ||||
Sbjct 74169 TACAGGATAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGAC 74228
Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237
||| || || |||| | | ||| | | | | | | || | ||||||||
Sbjct 74229 TTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGC 74288
Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297
|| ||||| | ||||| ||||| |||||| | ||||| | ||| || ||
Sbjct 74289 GAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGT 74348
Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357
|||| ||| || || ||| || || | ||| || || || ||||| ||||||
Sbjct 74349 GCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTG 74408
Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
|| ||||| |||||| | || | || || || ||||| | || ||||| || | |||
Sbjct 74409 GTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCA 74468
Query 111418 AA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476
| | || | | || | |||| | | || |||||| ||| |||||| || |
Sbjct 74469 CAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACA 74527
Query 111477 GGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAA 111534
| || |||||||| || || | || ||| | | ||||| || || ||| || |
Sbjct 74528 GAGCCTCAAACTCTTCGCC-ATAGCAGTCTGCCAAGCCTGG-GCATTCATTGGGGCACAT 74585
Query 111535 AAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592
|| | ||| | || | ||| |||||| ||||||||||| ||||| ||||| |||
Sbjct 74586 GAGCGTCCAGT--CCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGG 74643
Query 111593 GATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651
| |||| || || | | ||| || | ||||| | || ||||| |||| || ||
Sbjct 74644 GCCAAAAATAGGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAG 74702
Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 111708
|||||| | || ||| || ||||||||||| || || | || | | ||| |||
Sbjct 74703 GAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTT 74762
Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768
||| | || | ||||| || || ||| ||| || || || ||||| |||| |||
Sbjct 74763 GTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAAT 74822
Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828
|| | || ||| || || || ||| || | |||| | | | || |
Sbjct 74823 GCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAAC 74882
Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCA 111886
| | || ||||| || ||| ||| || || | ||||| | | | | || || |
Sbjct 74883 ATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCA-AGT-CTTGAGGGTATCG 74940
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|| || || | ||| ||| || || || | | ||||| || |||| |||||
Sbjct 74941 TAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCC 75000
Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990
|| ||||| ||||||||||| || |||| ||||||| ||||
Sbjct 75001 TGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAA 75044
>seq126
Length=40607
Score = 123 bits (136), Expect = 3e-23
Identities = 526/819 (64%), Gaps = 29/819 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| ||||| ||||||||||||||||||||||| || | || ||||| |||||
Sbjct 37817 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 37876
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484
||||| || || ||| | || ||| | | || | | |||| ||
Sbjct 37877 AAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA------AGC 37930
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|| || || | ||| |||||||||| | |||| || | |||||| || | ||
Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
||| || || || ||| || |||| | ||||| ||| |||| || || | | |||
Sbjct 37991 CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGATC 38050
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAA 122663
|| | || | |||| | || || || | ||| ||| |||||
Sbjct 38051 TTTTGCACGAGGTCCTTGCTGGGGCGGTTGTTCAG-GTGTGAGAACAGCAGGCAAGCAAA 38109
Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723
|| ||| ||||||||||| ||||||||||| || ||||||||| ||||| |||||
Sbjct 38110 GTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCAT 38169
Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783
|||||| ||||| || ||| |||||| | ||| | || ||||| ||||| || ||
Sbjct 38170 GAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATGCCTTC 38229
Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATT 122842
||| || || || | ||||| | |||||||| ||| | ||| | | ||| |
Sbjct 38230 GACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGATCCACT 38288
Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 122898
||| ||||| | ||||| || || || | ||| | || || | || |
Sbjct 38289 TCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAACAGGT 38348
Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958
| ||| || | ||| ||||| ||||| |||| |||| || || |||||
Sbjct 38349 ATGTGC-GCTGT---GATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTCA 38404
Query 122959 CCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 123017
|||| ||| ||| ||| | || | ||||||| |||| || ||| |||||
Sbjct 38405 GAGTGAATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCTG 38463
Query 123018 AACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077
|||||| ||| || | | || || || ||||| ||||| || | || ||
Sbjct 38464 AACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAA 38523
Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134
||| || || |||| ||||| | || || | | |||| || | ||||||||
Sbjct 38524 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGTC 38583
Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
|| ||||| ||||| | ||||| || || ||||||||
Sbjct 38584 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628025617624800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |