Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq545 165 1e-35 seq126 123 3e-23 >seq545 Length=97716 Score = 165 bits (182), Expect = 1e-35 Identities = 833/1304 (64%), Gaps = 35/1304 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| ||||||||||| ||||| || || | || |||| ||| Sbjct 73757 GGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGC 73816 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||||| ||||| ||||| | | |||| || || | ||| | || || || | Sbjct 73817 TGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCT 73876 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| ||| | ||| || | | | | || || |||| | ||||||| |||||||| Sbjct 73877 CCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGGAGTCACAT-CCCACATATCAAACTG 73934 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | |||||||| | |||||||||||| ||||| || | ||| | || | || Sbjct 73935 CAGGATGCCTTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGC 73994 Query 110944 CAATTCACAGCTC-GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | ||| || | || ||| | ||||| || ||||||||||| || | || | Sbjct 73995 GATTTC-CATCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGA 74053 Query 111003 TCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGC 111057 || |||||| || ||||| ||||||| | || || | || || Sbjct 74054 GCTGACGTGCTTCAGGGGACTCAAAAGGCATGCGTAGAGC-----AAGGAAGGCGTCAGC 74108 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 ||||| || ||||| | ||||| || | || ||||| || || | || || Sbjct 74109 CAGACCCTGCACACCAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTG 74168 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 || ||||| || ||||||| ||||| || ||| ||||| || |||| Sbjct 74169 TACAGGATAGTGGTTCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGAC 74228 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237 ||| || || |||| | | ||| | | | | | | || | |||||||| Sbjct 74229 TTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGC 74288 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 || ||||| | ||||| ||||| |||||| | ||||| | ||| || || Sbjct 74289 GAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGT 74348 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 |||| ||| || || ||| || || | ||| || || || ||||| |||||| Sbjct 74349 GCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTG 74408 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || ||||| |||||| | || | || || || ||||| | || ||||| || | ||| Sbjct 74409 GTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCA 74468 Query 111418 AA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 | | || | | || | |||| | | || |||||| ||| |||||| || | Sbjct 74469 CAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGACCCTCCTTCTCATACTTTTCATACA 74527 Query 111477 GGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAA 111534 | || |||||||| || || | || ||| | | ||||| || || ||| || | Sbjct 74528 GAGCCTCAAACTCTTCGCC-ATAGCAGTCTGCCAAGCCTGG-GCATTCATTGGGGCACAT 74585 Query 111535 AAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 || | ||| | || | ||| |||||| ||||||||||| ||||| ||||| ||| Sbjct 74586 GAGCGTCCAGT--CCTCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGG 74643 Query 111593 GATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| || || | | ||| || | ||||| | || ||||| |||| || || Sbjct 74644 GCCAAAAATAGGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAG 74702 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG--- 111708 |||||| | || ||| || ||||||||||| || || | || | | ||| ||| Sbjct 74703 GAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTT 74762 Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| | || | ||||| || || ||| ||| || || || ||||| |||| ||| Sbjct 74763 GTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAAT 74822 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828 || | || ||| || || || ||| || | |||| | | | || | Sbjct 74823 GCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAAC 74882 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCA 111886 | | || ||||| || ||| ||| || || | ||||| | | | | || || | Sbjct 74883 ATTGAGACCGATACCACCGGCCATCTTGGAAATCATGGCGCA-AGT-CTTGAGGGTATCG 74940 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || || || | ||| ||| || || || | | ||||| || |||| ||||| Sbjct 74941 TAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCC 75000 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 || ||||| ||||||||||| || |||| ||||||| |||| Sbjct 75001 TGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAGTGAA 75044 >seq126 Length=40607 Score = 123 bits (136), Expect = 3e-23 Identities = 526/819 (64%), Gaps = 29/819 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| ||||||||||||||||||||||| || | || ||||| ||||| Sbjct 37817 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 37876 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || ||| | || ||| | | || | | |||| || Sbjct 37877 AAGTCGAAGGGGTTCGTGGCACGGTAAACCTTCTCGTTGCCTAGAGCAACA------AGC 37930 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || || || | ||| |||||||||| | |||| || | |||||| || | || Sbjct 37931 AGGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGA 37990 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| || || || ||| || |||| | ||||| ||| |||| || || | | ||| Sbjct 37991 CCACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGATCACAACGGCGTCAGTGATGATC 38050 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAA 122663 || | || | |||| | || || || | ||| ||| ||||| Sbjct 38051 TTTTGCACGAGGTCCTTGCTGGGGCGGTTGTTCAG-GTGTGAGAACAGCAGGCAAGCAAA 38109 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || ||| ||||||||||| ||||||||||| || ||||||||| ||||| ||||| Sbjct 38110 GTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCAT 38169 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||||| ||||| || ||| |||||| | ||| | || ||||| ||||| || || Sbjct 38170 GAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATGCCTTC 38229 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATT 122842 ||| || || || | ||||| | |||||||| ||| | ||| | | ||| | Sbjct 38230 GACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGATCCACT 38288 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAAAT 122898 ||| ||||| | ||||| || || || | ||| | || || | || | Sbjct 38289 TCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAACAGGT 38348 Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958 | ||| || | ||| ||||| ||||| |||| |||| || || ||||| Sbjct 38349 ATGTGC-GCTGT---GATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTCA 38404 Query 122959 CCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTG 123017 |||| ||| ||| ||| | || | ||||||| |||| || ||| ||||| Sbjct 38405 GAGTGAATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCTG 38463 Query 123018 AACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077 |||||| ||| || | | || || || ||||| ||||| || | || || Sbjct 38464 AACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAA 38523 Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134 ||| || || |||| ||||| | || || | | |||| || | |||||||| Sbjct 38524 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGTC 38583 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 || ||||| ||||| | ||||| || || |||||||| Sbjct 38584 GTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025617624800