Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq545 147 3e-30 seq126 114 2e-20 >seq545 Length=97716 Score = 147 bits (162), Expect = 3e-30 Identities = 837/1324 (63%), Gaps = 25/1324 (2%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 ||||| || || || ||| | | | ||||| |||| |||||| || |||||||||||| Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||||| || | || || | |||| |||||| ||||||||||| | |||||| || Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851 Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG-CGTCCCA-GTCGTAGTTGAGCTTTG 118332 || | ||| | | |||| ||||| |||| |||| | | || | | || | Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910 Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 | | | | ||||||||||||||| ||||| |||||||| | || || |||||| | | Sbjct 73911 AGT-CACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAAT----TCGGAGCTCGCCTCGAGGGCTGCGTGA 118448 | || | ||||| || || | | ||| ||| | || || ||||| Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025 Query 118449 TACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAG 118507 || || |||||||| || | || | || | | || || ||| ||||| | | Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGT-GCTTCAGGGGACTCAAAAGGCAT 74084 Query 118508 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 || || || | || || ||||| || ||||| | |||||| || ||||| | Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || || |||| || || ||||| ||| ||| || | | || || Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 ||| ||||||| |||| ||| || ||||||| | ||| | | | | Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | | || | ||||||||||| || || || || ||||||| | |||||| Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 || ||||| ||||| || ||||| | ||| || || |||||| || | || || Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 ||||| ||| ||| || || |||||||||||| | || | || || || || Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926 |||| | ||||| || | ||| | | || | || | ||| | | || | Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 |||| | ||| |||||| || || || ||||||||||| || | |||| | | Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGC 74563 Query 118987 CTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 |||| || || || ||||| | ||| | ||| | || || |||||| ||||||||| Sbjct 74564 CTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATG 74622 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 || ||||| ||||||||| ||| | || || || ||| || ||||||| | || Sbjct 74623 AACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCG 74682 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | || | || || | || ||| || ||||| || || ||||| | Sbjct 74683 TGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATA 74742 Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | | || || ||| |||||| ||||| | || ||| ||| || Sbjct 74743 GCAAAGGCTCCGGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAA 74802 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280 ||||| ||||| |||| || || | || || || || || || || ||| | Sbjct 74803 ACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCC- 74861 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 | |||| | | | ||| | | | ||| ||||| || ||| ||| || || | Sbjct 74862 -AGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCCATCTTGGAAATCATGG 74920 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 |||| | |||| | |||| || || ||||| |||| | || | | | |||| Sbjct 74921 CGCAAGTCTTGAGGGTATCGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGA 74980 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 | || |||| || | | ||| ||||| || |||||||| || |||| ||||| Sbjct 74981 AACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAG 75040 Query 119461 TGAA 119464 |||| Sbjct 75041 TGAA 75044 >seq126 Length=40607 Score = 114 bits (126), Expect = 2e-20 Identities = 341/520 (66%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||| |||||||| || || || || |||||| |||||| Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| ||||| || ||||||||| | || | || ||||| ||||| Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAA 130194 || || ||| ||||| || | || |||| || |||| || | |||| | Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGAT 38283 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||||| ||||| | ||||| ||| || || | || | || || | || Sbjct 38284 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAA 38343 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314 || | | | |||||| || |||||||| | || || || || || ||||| Sbjct 38344 CAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTC 38403 Query 130315 GCCATGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373 || | ||| ||| || | ||| | ||||||| |||| || ||| |||| Sbjct 38404 AGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCT 38462 Query 130374 GTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433 | ||||| | | || | | || || || ||||| ||||| || | || | Sbjct 38463 GAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGA 38522 Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 130490 | || || || || | ||||| | ||| || | || ||||| || | ||||||| Sbjct 38523 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGT 38582 Query 130491 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||| |||||||| |||||||| | |||||| |||||||| Sbjct 38583 CGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428915152280