Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq545 147 3e-30
seq126 114 2e-20
>seq545
Length=97716
Score = 147 bits (162), Expect = 3e-30
Identities = 837/1324 (63%), Gaps = 25/1324 (2%)
Strand=Plus/Plus
Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214
||||| || || || ||| | | | ||||| |||| |||||| || ||||||||||||
Sbjct 73732 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGACGTGTAGGGTTCAAAGCACTCA 73791
Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274
||||| || | || || | |||| |||||| ||||||||||| | |||||| ||
Sbjct 73792 TTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAGGCATGGGTGCAACGAGAAGAGAATTG 73851
Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG-CGTCCCA-GTCGTAGTTGAGCTTTG 118332
|| | ||| | | |||| ||||| |||| |||| | | || | | || |
Sbjct 73852 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAATCCCACAGGTCA-CTGGG 73910
Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392
| | | | ||||||||||||||| ||||| |||||||| | || || |||||| | |
Sbjct 73911 AGT-CACATCCCACATATCAAACTGCAGGATGCCTTGGGAGACAGGAGAACCCTCATAGG 73969
Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAAT----TCGGAGCTCGCCTCGAGGGCTGCGTGA 118448
| || | ||||| || || | | ||| ||| | || || |||||
Sbjct 73970 TTGAGTAAGTACCCTCGGTCTGGGCGATTTCCATCGAAGCAGTC----AGTGCAGCGTGG 74025
Query 118449 TACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAG 118507
|| || |||||||| || | || | || | | || || ||| ||||| | |
Sbjct 74026 TAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGT-GCTTCAGGGGACTCAAAAGGCAT 74084
Query 118508 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567
|| || || | || || ||||| || ||||| | |||||| || ||||| |
Sbjct 74085 GCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACACCAACGCCAATGGGACGATGGCG 74144
Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627
||| || || |||| || || ||||| ||| ||| || | | || ||
Sbjct 74145 CATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGTTCACATCAATGATGCGGTTCAG 74204
Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687
||| ||||||| |||| ||| || ||||||| | ||| | | | |
Sbjct 74205 GTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTT 74264
Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747
| | || | ||||||||||| || || || || ||||||| | ||||||
Sbjct 74265 GTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG 74324
Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807
|| ||||| ||||| || ||||| | ||| || || |||||| || | || ||
Sbjct 74325 GGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGCTGCGAATGGTACCTAGATTTTT 74384
Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867
||||| ||| ||| || || |||||||||||| | || | || || || ||
Sbjct 74385 CTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTTTCAGT 74444
Query 118868 TTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926
|||| | ||||| || | ||| | | || | || | ||| | | || |
Sbjct 74445 CTGGGCTTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCATGCGACCGCGAC 74503
Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986
|||| | ||| |||||| || || || ||||||||||| || | |||| | |
Sbjct 74504 CCTCCTTCTCATACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAGTCTGCCAAGC 74563
Query 118987 CTGGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045
|||| || || || ||||| | ||| | ||| | || || |||||| |||||||||
Sbjct 74564 CTGG-GCATTCATTGGGGCACATGAGCGTCCAGTCCTCATTCTTCTCAACACGCTTCATG 74622
Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105
|| ||||| ||||||||| ||| | || || || ||| || ||||||| | ||
Sbjct 74623 AACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCACGAGCACGGACTTCTTCCTTTCCG 74682
Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165
|| || || | || | || || | || ||| || ||||| || || ||||| |
Sbjct 74683 TGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCAGCATGCCATGGCTCGAGGTAAATA 74742
Query 119166 GCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222
|| | | || || ||| |||||| ||||| | || ||| ||| ||
Sbjct 74743 GCAAAGGCTCCGGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAA 74802
Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280
||||| ||||| |||| || || | || || || || || || || ||| |
Sbjct 74803 ACACGCAGCATGGGAACAATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAGGAGCC- 74861
Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340
| |||| | | | ||| | | | ||| ||||| || ||| ||| || || |
Sbjct 74862 -AGTGGCACGAATACGGTGAACATTGAGACCGATACCACCGGCCATCTTGGAAATCATGG 74920
Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400
|||| | |||| | |||| || || ||||| |||| | || | | | ||||
Sbjct 74921 CGCAAGTCTTGAGGGTATCGTAAATGCCTTCGATACTGTCATCTTTCATGTCAACTAGGA 74980
Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460
| || |||| || | | ||| ||||| || |||||||| || |||| |||||
Sbjct 74981 AACATGAAGACAACTGCGCCTGGGGAGTACCGGCATTGAAGAGCGTAGGTGATGCGTGAG 75040
Query 119461 TGAA 119464
||||
Sbjct 75041 TGAA 75044
>seq126
Length=40607
Score = 114 bits (126), Expect = 2e-20
Identities = 341/520 (66%), Gaps = 7/520 (1%)
Strand=Plus/Plus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| |||||||| |||||||| || || || || |||||| ||||||
Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||||||||| ||||| || ||||||||| | || | || ||||| |||||
Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAA 130194
|| || ||| ||||| || | || |||| || |||| || | |||| |
Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGG-TCGACTCCTTGTCGGTGAT 38283
Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254
|||||||| ||||| | ||||| ||| || || | || | || || | ||
Sbjct 38284 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATTGCATTGAA 38343
Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 130314
|| | | | |||||| || |||||||| | || || || || || |||||
Sbjct 38344 CAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTC 38403
Query 130315 GCCATGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 130373
|| | ||| ||| || | ||| | ||||||| |||| || ||| ||||
Sbjct 38404 AGAGTGAATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCT 38462
Query 130374 GTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433
| ||||| | | || | | || || || ||||| ||||| || | || |
Sbjct 38463 GAACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGA 38522
Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 130490
| || || || || | ||||| | ||| || | || ||||| || | |||||||
Sbjct 38523 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGGCGGTTGTTCCAGT 38582
Query 130491 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
||| |||||||| |||||||| | |||||| ||||||||
Sbjct 38583 CGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 38622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428915152280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |