Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq545 165 9e-36 seq126 98.7 1e-15 >seq545 Length=97716 Score = 165 bits (182), Expect = 9e-36 Identities = 914/1436 (64%), Gaps = 51/1436 (4%) Strand=Plus/Minus Query 104534 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGG 104593 || ||| |||| ||||| || || || ||| ||| || || ||||| | || | ||| Sbjct 74825 GGCATTGTTCCCATGCTGCGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGGTGGA 74766 Query 104594 CGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 104650 ||| ||| | | || | || || ||||||||||| || ||| || | ||| Sbjct 74765 AACAAGCGACCCGGAGCCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTCTTTGAG 74706 Query 104651 TTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTC 104709 ||||| || | || ||||| || | || || | || ||| || || || || | Sbjct 74705 TTCCTCGACCTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTTTT 74647 Query 104710 CGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCT 104769 || |||||||| || || ||||||||| | |||||| ||| || | ||| | || Sbjct 74646 GGCCCTCTGGATCTGTGACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGACGCT 74587 Query 104770 CTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCC 104827 | | || || | || || || || | | || ||| ||| || |||||||| || Sbjct 74586 CATGTGCCCCAATGAATGC-CCAGGCTTGGCAGACTGCTATGGC-GAAGAGTTTGAGGCT 74529 Query 104828 CTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCC-GATG- 104885 || || |||||| ||| | || ||||| | | | || | || || || || | Sbjct 74528 CTGTATGAAAAGTATGAGAAGGAGGGTCGCG-GTC-GCATGGTTGTCAAGGCCCAGAAGC 74471 Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||||| | | || || || ||||| | || | |||||||||||||| Sbjct 74470 TGTGGTATGCCATTCTGGAAGCCCAGACTGAAACTGGCAACCCTTTCATGCTTTACAAAG 74411 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 || ||| |||| ||||| ||||| || ||| | ||| || || || || || | Sbjct 74410 ACCACTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCATTCGCAGCTCTAACCTAT 74351 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | || || || | || | | | | |||||| |||||||| ||||| ||||| Sbjct 74350 GCACTGAGATTATTGAGTATTGTGCCCCTGATGAGGTCGCTGTGTGCAACCTAGCATCTC 74291 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGATTATGAAAAACTCCA 105123 |||| || || | ||||| | | | |||| | | ||| | | |||| || || Sbjct 74290 TCGCCCTTCCTTCCTTCGTGGA-CTACA-ACAAGGGTGAGTATGACTTTAAAAAGCTACA 74233 Query 105124 CGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 105183 |||||| || | ||| |||||| ||| | | |||||| || || || Sbjct 74232 CGAAGTCACCCAGGTTGTTGTTCGAAACCTGAACCGCATCATTGATGTGAACCACTATCC 74173 Query 105184 CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGG 105243 || || |||| || || ||| | || ||||| ||||| | ||||| ||||| Sbjct 74172 TGTACAGGAAGCTCACAACAGCAACATGCGCCATCGTCCCATTGGCGTTGGTGTGCAGGG 74113 Query 105244 TCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAAT 105303 ||| || || | ||| || | ||| | ||||| ||| ||||| | | Sbjct 74112 TCTGGCTGACGCCTTCCTTGCTCTACGCATGCCTTTTGAGTCCCCTGAAGCACGTCAGCT 74053 Query 105304 CAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTT 105360 ||| || |||||||| ||||| || ||||| || || || ||| || | Sbjct 74052 CAACAAGCAAATATTTGAAACCATCTACCACGCTGCACTGACTGC---TTCGATGGAAAT 73996 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 || || || ||| | || ||||| |||||||||||| | || ||||| | || Sbjct 73995 CGCCCAGACCGAGGGTACTTACTCAACCTATGAGGGTTCTCCTGTCTCCCAAGGCATCCT 73936 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TACGACTGGGAAGCTCTCAA 105477 || |||||||||||||| | ||| || || | || | || ||| |||| || Sbjct 73935 GCAGTTTGATATGTGGGATG-TGACTCCCAG--TGACCTGTGGGATTGGACTTCTCTGAA 73879 Query 105478 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGC 105537 ||| || || || | ||| | || || ||| ||| | || || ||||| ||||| Sbjct 73878 GGAGAAGATTAAACAGCATGGTGTACGCAATTCTCTTCTCGTTGCACCCATGCCTACAGC 73819 Query 105538 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 | ||| |||| || | || || ||||| |||||||||||||||||| | |||||||| Sbjct 73818 CAGCACATCACAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACGTCCAACATCTA 73759 Query 105598 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCATCT-CGTGGATG 105653 | | | | || || || ||||| | | ||||| | || ||| || || Sbjct 73758 CCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTCGTCAACCCCTGGCTTCTACG----TG 73703 Query 105654 ACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA----TGGTGAAAGCG 105709 |||| || ||||||| ||||| | |||||||| ||| || || || | | Sbjct 73702 ACCTGGTCGATCTTGGTCTATGGTCTGACAATATGAAGAATCGCATTATTGCCGACAAC- 73644 Query 105710 GGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACA 105769 || |||||||| || ||| ||||| ||| ||||| ||||| || Sbjct 73643 ---GGCTCCATTCAGAACATTTCCAGCATTCCTCCTGATATTAAAGCTCTGTACAAGACG 73587 Query 105770 GTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826 |||||||| || | || | | || | | ||||| || || |||||| ||| Sbjct 73586 GTTTGGGAGATTTCCCAGCGTACAGTTG---TACAAATGGCTGCTGACCGTGGTGCTTTC 73530 Query 105827 ATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCT 105886 ||||| ||| || | | || | |||| || ||| || ||| |||| || | Sbjct 73529 ATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATCACC 73470 Query 105887 TCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 105942 |||||| | | | ||||| ||| ||||| ||||| ||||| ||||| || Sbjct 73469 AGCATGCACTTTGCCGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACG 73414 >seq126 Length=40607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809 || || || |||||| |||||||| | |||| ||||| |||| || |||| Sbjct 38307 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGA---CCTTCGCCCAGCGC 38251 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || || || ||| || || ||||| ||||| ||| | ||| | |||||| Sbjct 38250 CTGGTAGCTTTCGCTGCTGTCGAAGGCATCTTTTTCTCGGGTGCTTTCGCCTCTATTTTC 38191 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||||||||||| ||||| |||||| ||||||||||| || ||| Sbjct 38190 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCCCGT 38131 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || ||| || ||||| Sbjct 38130 GATGAGGGTCTGCACACCGACTTTGC 38105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254872612120