Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq734 176 1e-38 seq357 114 4e-20 seq813 113 1e-19 seq160 113 1e-19 >seq734 Length=84471 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||||| | | |||||| |||||||||||||| || || || || | Sbjct 21439 TTTGCATACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 21498 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || |||| || || ||||| |||||||| ||||||||||| || ||||| ||||| | Sbjct 21499 AGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGT 21558 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | || || || ||||| | ||| |||| Sbjct 21559 CCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATG 21618 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || |||| |||||||| ||||| || || || || || ||||| Sbjct 21619 ACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 Score = 150 bits (166), Expect = 5e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 |||||| |||||||| | | | ||| | |||||||||||||| ||||||||||| Sbjct 21210 TTTTACTGGCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTG 21269 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || |||| || || ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 21270 TAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGG 21329 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 || || ||||| || || || ||||| || || | || || || ||||| | ||| || Sbjct 21330 TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAA 21389 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || |||| |||||||| ||||| || || || || || ||||| Sbjct 21390 GACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 141 bits (156), Expect = 3e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||||| | | |||||| ||||||||||| ||||| || ||||| | Sbjct 21667 TTTGCATACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGT 21726 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || |||| || || ||||| ||||| || |||||||| || || ||||| ||||| | Sbjct 21727 AGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGT 21786 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | || || || ||||| | ||| || | Sbjct 21787 CCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAG 21846 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || |||| ||||| || || Sbjct 21847 ACTCCACCTCGAGGGTAATGGTCTTGCCAGT 21877 >seq357 Length=115873 Score = 114 bits (126), Expect = 4e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || ||||| | || || ||||| || || || || ||||| ||||| Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || |||||||| || || || |||||||| || | || ||||| || Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 6054 ATCTGCAT 6061 >seq813 Length=72463 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| |||||||| || ||||| || || || | |||||| || || || || || Sbjct 20697 GCTGTCATTACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 20638 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || || ||||| || || ||| Sbjct 20637 GGTCTCATTGCCGGCCTGAACGTCCTGCGTATCATCAACGAGCCTACTGCCGCTGCCATT 20578 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 20577 GCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGT 20518 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| || || || || || || || | Sbjct 20517 GGTGGTACTTTCGATGTCTCGCTGCTGACCATTGAGGACGGTATCTTCGAGGTCAAGTCC 20458 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || ||||||||||| || || ||||| ||||| Sbjct 20457 ACCGCTGGTGATACCCACCTGGGTGGTGAAGA 20426 >seq160 Length=36261 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||||| | || ||||| || || || ||||| || || || || || || Sbjct 3374 ATACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3433 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||||||||| | || ||||| || || Sbjct 3434 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 3493 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || |||| || || | || Sbjct 3494 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 3553 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 3554 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515238616257839