Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq734 176 1e-38
seq357 114 4e-20
seq813 113 1e-19
seq160 113 1e-19
>seq734
Length=84471
Score = 176 bits (194), Expect = 1e-38
Identities = 180/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||||| | | |||||| |||||||||||||| || || || || |
Sbjct 21439 TTTGCATACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 21498
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || |||| || || ||||| |||||||| ||||||||||| || ||||| ||||| |
Sbjct 21499 AGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGT 21558
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || ||||| || || | || || || ||||| | ||| ||||
Sbjct 21559 CCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATG 21618
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || |||| |||||||| ||||| || || || || || |||||
Sbjct 21619 ACTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 150 bits (166), Expect = 5e-31
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561
|||||| |||||||| | | | ||| | |||||||||||||| |||||||||||
Sbjct 21210 TTTTACTGGCCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTG 21269
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|| || |||| || || ||||| ||||| || |||||||| || || ||||| |||||
Sbjct 21270 TAGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGG 21329
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|| || ||||| || || || ||||| || || | || || || ||||| | ||| ||
Sbjct 21330 TCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAA 21389
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || |||| |||||||| ||||| || || || || || |||||
Sbjct 21390 GACTCCACCTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 141 bits (156), Expect = 3e-28
Identities = 158/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||||| | | |||||| ||||||||||| ||||| || ||||| |
Sbjct 21667 TTTGCATACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGT 21726
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || |||| || || ||||| ||||| || |||||||| || || ||||| ||||| |
Sbjct 21727 AGTCGGATAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGT 21786
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || ||||| || || | || || || ||||| | ||| || |
Sbjct 21787 CCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAG 21846
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || |||| ||||| || ||
Sbjct 21847 ACTCCACCTCGAGGGTAATGGTCTTGCCAGT 21877
>seq357
Length=115873
Score = 114 bits (126), Expect = 4e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| ||||| || || ||||| | || || ||||| || || || || ||||| |||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || |||||||| || || || |||||||| || | || ||||| ||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 6054 ATCTGCAT 6061
>seq813
Length=72463
Score = 113 bits (124), Expect = 1e-19
Identities = 188/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| |||||||| || ||||| || || || | |||||| || || || || ||
Sbjct 20697 GCTGTCATTACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 20638
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || || || | || || || || || ||||| || || |||
Sbjct 20637 GGTCTCATTGCCGGCCTGAACGTCCTGCGTATCATCAACGAGCCTACTGCCGCTGCCATT 20578
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 20577 GCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGT 20518
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || |||| || || || || || || || |
Sbjct 20517 GGTGGTACTTTCGATGTCTCGCTGCTGACCATTGAGGACGGTATCTTCGAGGTCAAGTCC 20458
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
|| ||||||||||| || || ||||| |||||
Sbjct 20457 ACCGCTGGTGATACCCACCTGGGTGGTGAAGA 20426
>seq160
Length=36261
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||||| | || ||||| || || || ||||| || || || || || ||
Sbjct 3374 ATACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3433
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| ||||| || || ||||||||||| | || ||||| || ||
Sbjct 3434 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 3493
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || || || ||||| || || | || || || || |||| || || | ||
Sbjct 3494 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 3553
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || |||| ||||| || || || || || || |||
Sbjct 3554 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 3595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515238616257839
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |