Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq545 172 6e-38 seq126 145 8e-30 seq245 87.8 2e-12 >seq545 Length=97716 Score = 172 bits (190), Expect = 6e-38 Identities = 406/599 (68%), Gaps = 22/599 (4%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGTACG 53252 ||||| || || ||||||| |||||| | | ||||||| | ||| || ||| Sbjct 75122 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGAACGCGTG--CTTGAAACCTACA 75065 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || ||||| | || || || ||||| || |||| Sbjct 75064 ACCTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTCAATGCCGGTA 75008 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| |||| || ||||| || | ||||| |||||| ||||| | Sbjct 75007 CTCCCCAGGCGCAGTTGTCTTCATGTTTCCTAGTTGACATGAAAGATGACAGTATCGAAG 74948 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 |||| ||||| || |||||| || ||| || |||||| | | |||||||||||| Sbjct 74947 GCATTTACGATACCCTCAAGACTTGCGCCATGATTTCCAAGATGGCCGGTGGTATCGGTC 74888 Query 53430 TCCACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTC 53485 || | || || | ||| ||||| | ||| | || || || ||||| | || Sbjct 74887 TCAA-TGTTC-ACCGTATTCGTGCCACTGGCTCCTACATTGCTGGCACTAACGGTACTTC 74830 Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 | | || || || || ||||| || || ||||||||||| ||||| || || ||||| Sbjct 74829 GA--ACGGCATTGTTCCCATGCTGCGTGTTTTCAACAACACCGCCCGTTATGTTGACCAG 74772 Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 ||||| ||||| || | || || || ||||||||||| ||||| || || | Sbjct 74771 GGTGGAAACAAGCGACCCGGAGCCTTTGCTATTTACCTCGAGCCATGGCATGCTGATGTC 74712 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCT 53664 | ||||| ||||| || || ||| || || | ||||| | || ||| |||||||| Sbjct 74711 TTTGAGTTCCTCGACCTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCT 74653 Query 53665 GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 ||| || || ||||| ||||| |||||| | || |||||| | ||||| || Sbjct 74652 ATTTTTGGCCCTCTGGATCTGTGACCTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTG 74593 Query 53725 GTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 | || |||||||| || || ||||| ||| | ||| || ||| || || |||||| Sbjct 74592 GACGCTCATGTGCCCCAATGAATGCCCAGGCTTGGCAGACTG-CTATGGCGAAGAGTTT 74535 Score = 102 bits (112), Expect = 9e-17 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGA--AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCG 55801 |||||| ||||||||| | ||| | ||| || | | ||| |||||| |||||||| Sbjct 73590 GACGGTTTGGGAGATTTCCCAGCGTACAGT-TG-TACAAATGGCTGCTGACCGTGGTGCT 73533 Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861 | ||| ||||| || |||||||| ||||| |||| | |||| | ||| |||| | Sbjct 73532 TTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCCACCATGGGCAAGATC 73473 Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGG 55921 | | ||||||||| ||| ||||| ||| |||||||||||||||||||| || || Sbjct 73472 ACCAGCATGCACTTTGCCGGCTGGAAACTGGGCCTCAAGACGGGTATGTACTACCTACGT 73413 Query 55922 AC 55923 || Sbjct 73412 AC 73411 >seq126 Length=40607 Score = 145 bits (160), Expect = 8e-30 Identities = 536/823 (65%), Gaps = 34/823 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| ||||| ||||||||||| || | | ||||||||||||||| Sbjct 37817 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCTCCATG 37876 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577 ||||||| |||||| | |||| ||||| |||||| || | | | || | | Sbjct 37877 AAGTCGAAGGGGTTCGTGGCACGGTAAA---CCTTCTCGTTGCCTAGA--GCAACAAGCA 37931 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 |||| || || ||||| | |||||| ||| |||| | || | ||| || | || Sbjct 37932 GGCGGTCAGCAACAAACTCAATGTATTGCTTCATCAGATCGGCGTTCATTCCCAGTAGAC 37991 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAA--GC-CCATTGGACAA 74694 || ||||| ||||| |||| ||||| |||| | || ||| || || | || | Sbjct 37992 CACAGGGCAGAGCCTCCGTGAGGAACTCCTTCTCGA--TCACAACGGCGTCAGT-GATGA 38048 Query 74695 TCTTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 |||| || | ||| ||| |||| || | ||||||| ||| | ||| | || Sbjct 38049 TCTTTTGCACGAGGTCCTTGCTGGGGCGGTTGT---TCAGGTGTGAGAACAGCAGGCA-A 38104 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || ||| || ||||| | | || | || || || || | || ||| Sbjct 38105 GCAAAGTCGGTGTGCAGACCCTCATCACGGGAAATAAGCTCGTTTGAGAAGGTCAGACCA 38164 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || |||||||| || ||| || || | ||| | ||| ||| |||||| Sbjct 38165 GGCATGAGACCACGCTTGCGCAGCCAGAAAATAGAGGCGAAAGCACCCGAGAAAAAGATG 38224 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATC 74927 ||||||||| || || || || ||||| || ||||| || | | | || ||| Sbjct 38225 CCTTCGACAGCAGCGAAAGCTACCAGGCGCTGGGCGAAGGTCGACTCCTTGTCGGTGATC 38284 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAA 74986 || || ||||||| || || || || || |||||| | ||| || || || | ||| Sbjct 38285 CACTTCAGAGCCCAGTCGGCCTTGCGGCGGA-TGCAGGGAATAGTGTCAATTGCATTGAA 38343 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 ||| || || | || ||||||| | |||| |||| || ||||| || || Sbjct 38344 CAGGTATGTGCGCTGTGATGGCTCCTTGATGTAGGTGTCGATCAGCAGCGAGTAGGTTTC 38403 Query 75047 CGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106 || ||||| || | | |||| | ||||||| | || ||||| | ||||| Sbjct 38404 AGAGTGAATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTG 38463 Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 || || || || | ||| || || |||| ||||| || ||||||||||| Sbjct 38464 AACCTCGCCCGAGAAGCGCTCAACGAGGTTTTCGTTGACAATGCCATCAGAGGCGGCGAA 38523 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC----GTCAGTGAGTTTGTCCCAAT 75222 || || || | ||| |||| |||| || |||| | | |||| ||| | Sbjct 38524 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAG-GCGGTTGTTCCAGT 38582 Query 75223 CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | | || ||| | | |||||||||||| | |||||||| Sbjct 38583 CGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 38625 >seq245 Length=27295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||| ||| |||||||||||| || | ||| || | ||||| ||||||| || Sbjct 20523 GCAGCGTCCGAGCCACCAGCAAGGCGTGAACCAAAGTTACCACTGGGCTCCAGACAATTG 20464 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || ||||||| ||||||||| | ||| || ||| ||| || Sbjct 20463 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAAGCCAATAATGGTTTGTTGCAGGGATGCT 20404 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || | || || | | || | || ||||||| | | || ||||| Sbjct 20403 TCTCCGTGTTGGTAGGAGGTGTGTCCAGAAACAAAACCAGCCAGCTCAACAACTTTCATA 20344 Query 117506 T-CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 | |||| | ||| || ||| ||| || ||||| ||||| ||||| | ||||| | Sbjct 20343 TCCTGA-ACAATGTTTTTGCTGAAGCACGCGTAAATGACCTTTCGCTGGCCAGGCTTTAA 20285 Query 117565 ACCATCC 117571 |||||| Sbjct 20284 GCCATCC 20278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210438917400