Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq734 114 1e-20
seq357 82.4 7e-11
>seq734
Length=84471
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||| || || ||| | ||||| || || ||||| | ||
Sbjct 21445 ATGCAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCG 21386
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || || || ||||| || || || || || || ||
Sbjct 21385 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 21326
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || || | || || | ||| | ||||| |||||
Sbjct 21325 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAAT 21266
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||||||||||| || | || |||||||||||| |||| ||||||
Sbjct 21265 ATTCAAAAGGAGTCTACTCTTCACTTGGTTTTGCGTCTGCGTGGTGGC 21218
>seq357
Length=115873
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | ||||| || || || || | ||
Sbjct 6061 ATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 6002
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| || ||||| || || || ||
Sbjct 6001 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 5942
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || |||| || | ||| | || || ||||||
Sbjct 5941 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAAC 5882
Query 27168 ATTCAAAAGG 27177
||||| ||||
Sbjct 5881 ATTCAGAAGG 5872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434913980141760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |