Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq357 156 1e-32
seq160 150 4e-31
seq734 143 6e-29
>seq357
Length=115873
Score = 156 bits (172), Expect = 1e-32
Identities = 149/191 (78%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || | ||||| | ||||| |||||||||||||| ||||||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || ||||| ||||||| || ||||||||||| ||||| || || || |||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| ||||| ||| ||||||||||| || |||||||| ||||| || ||||| || ||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 211107 ACCTGCATTTT 211117
| |||||| ||
Sbjct 6054 ATCTGCATCTT 6064
>seq160
Length=36261
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| || |||||||| || |||||||| || || | || || | |||||
Sbjct 3392 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 3451
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | ||| || ||||| || |||| || |||||||||
Sbjct 3452 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 3511
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || ||||| || || || |||
Sbjct 3512 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 3571
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || ||||| || ||
Sbjct 3572 TTACCCGTCAGGGTCTTGACGAA 3594
>seq734
Length=84471
Score = 143 bits (158), Expect = 6e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||||||||| ||||| ||||| || || || || | ||||| | ||||| || |||||
Sbjct 21242 GTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCAAGCTG 21301
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || ||||| || || || || ||||| || |||| || |||||||||||||||||
Sbjct 21302 CTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 21361
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| ||||| || ||||| || || || |||||||| || || |||||||| ||
Sbjct 21362 GGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTTCCAGT 21421
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
|||||||| || || | |||||
Sbjct 21422 TAGAGTCTTGACGAAGATTTGCAT 21445
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|||||||||||||| ||||| || |||||||| || || | ||||| | ||||| ||
Sbjct 21465 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 21524
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
|| ||||| || || || || || || || ||||| || |||| || ||||||||||||
Sbjct 21525 AGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21584
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || ||||| || ||||| || || || || ||||| || || ||||||
Sbjct 21585 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCTTT 21644
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || |||||||| || || | |||||
Sbjct 21645 CCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|||||||||||||| || ||||| ||||| || || || | ||||| | ||||| ||
Sbjct 21693 ACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCATCCTCA 21752
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
|||||||| || ||||| || || || || ||||| || |||| || ||||||||||||
Sbjct 21753 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 21812
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || ||||| || ||||| || || || |||||||| || || |||||
Sbjct 21813 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTTG 21872
Query 211086 CCCGT 211090
|| ||
Sbjct 21873 CCAGT 21877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159139925620745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |