Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq545 237 2e-57 >seq545 Length=97716 Score = 237 bits (262), Expect = 2e-57 Identities = 1122/1762 (64%), Gaps = 49/1762 (3%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 |||||||| ||||||||||| || || || ||||| |||| ||| || |||||||| Sbjct 73411 GTACGTAGGTAGTACATACCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTG 73470 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | ||| | ||||| || ||||| || | ||||| ||| || ||| Sbjct 73471 GTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATG 73530 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 ||||| || | ||||| ||||||| || || || || | ||| ||||||| || Sbjct 73531 AAAGCACCACGGTCAGCAGCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTC 73590 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| | | ||| |||||| |||| | | | | || |||||||| || || Sbjct 73591 TTGTACAGAGCTTTAATATCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCG 73650 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCA-----CAATTTCCTCTCTGTTAAAACTC 77103 | ||||| |||||| |||| ||| ||| ||| || | || | | Sbjct 73651 GCAATAATGCGATTCTTCATATTGTCAGACCATAGACCAAGATCGACCAGGTCA-----C 73705 Query 77104 TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 77163 || || || || || | || || || |||| | || | || ||| || | Sbjct 73706 GTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGT 73765 Query 77164 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTG 77223 | || || ||||| | | |||||||| || | ||| || | || || || | Sbjct 73766 TGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAG 73825 Query 77224 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGA 77282 |||| ||||| || | | | ||| | | |||||| |||| | || || || || ||| Sbjct 73826 GCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTT-TAATCTTCTCCTTCAGA 73884 Query 77283 TATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCG 77342 | |||||||||| || || || |||||||| | ||| | || || || || Sbjct 73885 GAAGTCCAATCCCACAGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCC- 73943 Query 77343 TTACTAG-CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACA 77401 || || || || || | ||| ||| |||| || || || | || | ||| || Sbjct 73944 TTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGATTTC-CA 74002 Query 77402 ACTC-GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG 77460 | || || ||| ||| || || ||||| || || | ||| ||||| | ||| Sbjct 74003 TCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTG 74062 Query 77461 CTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTC 77520 ||||| ||||| || ||| | || ||||| || || | ||||| || | Sbjct 74063 CTTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACAC 74122 Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580 ||| ||||| || | ||| | | | ||| | | |||||| | | |||||| | | Sbjct 74123 CAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGT 74182 Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640 | | || || || || || |||| |||||| || | || || | ||| || Sbjct 74183 TCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTT 74242 Query 77641 GAAAATCAAA-TCTTCCATCTATAA---CAAACATGTTCAAAG--CTATAGATGCTAGAT 77694 ||| ||| | || || | | | || | | ||| | | ||||||||| | Sbjct 74243 TAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGT 74302 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 | || || || ||||||| || | ||| | || ||||| || ||||| ||| | Sbjct 74303 TGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGC 74362 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 || || || ||||||| || |||||||| ||||| ||| || ||||| | Sbjct 74363 TGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCA 74422 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | || || | || |||||| |||| | ||| | ||| | | ||| | | ||| | Sbjct 74423 TGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA-GCTTCTGGGCC 74481 Query 77875 TTATCATAGATTTGTATCGCCTCTCTCTTTC--ATA--TTGAGTATATAGCCGTTCAAAT 77930 || || || | | ||| | ||| ||| ||| || || | |||| ||||| Sbjct 74482 TTGACAACCATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAGAGCC--TCAAAC 74538 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 || || || | || |||| || ||||||||||| |||||||| | | |||||| Sbjct 74539 TCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAGCGTCCAGTCC 74598 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 ||| | || ||| || ||||| || || ||| ||||| || || | |||||| || Sbjct 74599 TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCA 74658 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 || | | |||||| ||||| ||||| || ||||| ||||| | | |||| Sbjct 74659 CGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCA 74718 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | ||||||||| || || || || || | |||| ||||| || || || ||||| || Sbjct 74719 GCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCACCCTGGTCA 74778 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | ||| | ||||||||| || |||| | || ||| |||| ||| ||||| || || || Sbjct 74779 ACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCG 74838 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA--TTACTAATGGATATCCCTATTC 78288 || || |||| ||| || ||| | || |||||| | || || | || || | Sbjct 74839 TTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGA--CCGATAC 74896 Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATAC 78348 | || |||||||| || || | |||||| || | |||||||| || || || |||| Sbjct 74897 CACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTCGATAC 74956 Query 78349 TGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCAT 78408 ||||||| |||||| || || ||||| ||||| || || ||| || |||| Sbjct 74957 TGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCAT 75016 Query 78409 TAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 78468 | || | || || ||||| || || || | || ||| | || ||||| ||||||| Sbjct 75017 TGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAA 75076 Query 78469 TAGCTGATT---CTATGT---CCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 | || || ||| |||| ||| || || || |||||||| | ||| | Sbjct 75077 GCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGCAACACGCATTATCATGT 75130 Query 78523 GCTGAGGTCTTTCAACCGTCTT 78544 |||| || | |||||| |||| Sbjct 75131 GCTGGGGACGTTCAACGATCTT 75152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661740428320