Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq545 237 2e-57
>seq545
Length=97716
Score = 237 bits (262), Expect = 2e-57
Identities = 1122/1762 (64%), Gaps = 49/1762 (3%)
Strand=Plus/Plus
Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871
|||||||| ||||||||||| || || || ||||| |||| ||| || ||||||||
Sbjct 73411 GTACGTAGGTAGTACATACCCGTCTTGAGGCCCAGTTTCCAGCCGGCAAAGTGCATGCTG 73470
Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931
|| | ||| | ||||| || ||||| || | ||||| ||| || |||
Sbjct 73471 GTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATG 73530
Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991
||||| || | ||||| ||||||| || || || || | ||| ||||||| ||
Sbjct 73531 AAAGCACCACGGTCAGCAGCCATTTGTACAACTGTACGCTGGGAAATCTCCCAAACCGTC 73590
Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048
||| | | ||| |||||| |||| | | | | || |||||||| || ||
Sbjct 73591 TTGTACAGAGCTTTAATATCAGGAGGAATGCTGGAAATGTTCTGAATGGAGCCGTTGTCG 73650
Query 77049 GATATAATTGTATTCTTTATATCATCATTCCA-----CAATTTCCTCTCTGTTAAAACTC 77103
| ||||| |||||| |||| ||| ||| ||| || | || | |
Sbjct 73651 GCAATAATGCGATTCTTCATATTGTCAGACCATAGACCAAGATCGACCAGGTCA-----C 73705
Query 77104 TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 77163
|| || || || || | || || || |||| | || | || ||| || |
Sbjct 73706 GTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGT 73765
Query 77164 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTG 77223
| || || ||||| | | |||||||| || | ||| || | || || || |
Sbjct 73766 TGGACGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGTGATGTGCTGGCTGTAG 73825
Query 77224 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGA 77282
|||| ||||| || | | | ||| | | |||||| |||| | || || || || |||
Sbjct 73826 GCATGGGTGCAACGAGAAGAGAATTGCGTACACCATGCTGTT-TAATCTTCTCCTTCAGA 73884
Query 77283 TATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCG 77342
| |||||||||| || || || |||||||| | ||| | || || || ||
Sbjct 73885 GAAGTCCAATCCCACAGGTCACTGGGAGTCACATCCCACATATCAAACTGCAGGATGCC- 73943
Query 77343 TTACTAG-CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACA 77401
|| || || || || | ||| ||| |||| || || || | || | ||| ||
Sbjct 73944 TTGGGAGACAGGAGAACCCTCATAGGTTGAGTAAGTACCCTCGGTCTGGGCGATTTC-CA 74002
Query 77402 ACTC-GCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTG 77460
| || || ||| ||| || || ||||| || || | ||| ||||| | |||
Sbjct 74003 TCGAAGCAGTCAGTGCAGCGTGGTAGATGGTTTCAAATATTTGCTTGTTGAGCTGACGTG 74062
Query 77461 CTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTC 77520
||||| ||||| || ||| | || ||||| || || | ||||| || |
Sbjct 74063 CTTCAGGGGACTCAAAAGGCATGCGTAGAGCAAGGAAGGCGTCAGCCAGACCCTGCACAC 74122
Query 77521 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAAT 77580
||| ||||| || | ||| | | | ||| | | |||||| | | |||||| | |
Sbjct 74123 CAACGCCAATGGGACGATGGCGCATGTTGCTGTTGTGAGCTTCCTGTACAGGATAGTGGT 74182
Query 77581 TAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640
| | || || || || || |||| |||||| || | || || | ||| ||
Sbjct 74183 TCACATCAATGATGCGGTTCAGGTTTCGAACAACAACCTGGGTGACTTCGTGTAGCTTTT 74242
Query 77641 GAAAATCAAA-TCTTCCATCTATAA---CAAACATGTTCAAAG--CTATAGATGCTAGAT 77694
||| ||| | || || | | | || | | ||| | | ||||||||| |
Sbjct 74243 TAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGT 74302
Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754
| || || || ||||||| || | ||| | || ||||| || ||||| ||| |
Sbjct 74303 TGCACACAGCGACCTCATCAGGGGCACAATACTCAATAATCTCAGTGCATAGGTTAGAGC 74362
Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814
|| || || ||||||| || |||||||| ||||| ||| || ||||| |
Sbjct 74363 TGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAAAGCA 74422
Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874
| || || | || |||||| |||| | ||| | ||| | | ||| | | ||| |
Sbjct 74423 TGAAAGGGTTGCCAGTTTCAGTCTGGGCTTCCAGAATGGCATACCACA-GCTTCTGGGCC 74481
Query 77875 TTATCATAGATTTGTATCGCCTCTCTCTTTC--ATA--TTGAGTATATAGCCGTTCAAAT 77930
|| || || | | ||| | ||| ||| ||| || || | |||| |||||
Sbjct 74482 TTGACAACCATGCG-ACCGCGACCCTCCTTCTCATACTTTTCATACAGAGCC--TCAAAC 74538
Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990
|| || || | || |||| || ||||||||||| |||||||| | | ||||||
Sbjct 74539 TCTTCGCCATAGCAGTCTGCCAAGCCTGGGCATTCATTGGGGCACATGAGCGTCCAGTCC 74598
Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050
||| | || ||| || ||||| || || ||| ||||| || || | |||||| ||
Sbjct 74599 TCATTCTTCTCAACACGCTTCATGAACAGGTCACAGATCCAGAGGGCCAAAAATAGGTCA 74658
Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110
|| | | |||||| ||||| ||||| || ||||| ||||| | | ||||
Sbjct 74659 CGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAGGTCGAGGAACTCAAAGACATCA 74718
Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170
| ||||||||| || || || || || | |||| ||||| || || || ||||| ||
Sbjct 74719 GCATGCCATGGCTCGAGGTAAATAGCAAAGGCTCCGGGTCGCTTGTTTCCACCCTGGTCA 74778
Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230
| ||| | ||||||||| || |||| | || ||| |||| ||| ||||| || || ||
Sbjct 74779 ACATAACGGGCGGTGTTGTTGAAAACACGCAGCATGGGAACAATGCCGTTCGAAGTACCG 74838
Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATA--TTACTAATGGATATCCCTATTC 78288
|| || |||| ||| || ||| | || |||||| | || || | || || |
Sbjct 74839 TTAGTGCCAGCAATGTAGGAGCCAGTGGCACGAATACGGTGAACATTGAGA--CCGATAC 74896
Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATAC 78348
| || |||||||| || || | |||||| || | |||||||| || || || ||||
Sbjct 74897 CACCGGCCATCTTGGAAATCATGGCGCAAGTCTTGAGGGTATCGTAAATGCCTTCGATAC 74956
Query 78349 TGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCAT 78408
||||||| |||||| || || ||||| ||||| || || ||| || ||||
Sbjct 74957 TGTCATCTTTCATGTCAACTAGGAAACATGAAGACAACTGCGCCTGGGGAGTACCGGCAT 75016
Query 78409 TAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAA 78468
| || | || || ||||| || || || | || ||| | || ||||| |||||||
Sbjct 75017 TGAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAA 75076
Query 78469 TAGCTGATT---CTATGT---CCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522
| || || ||| |||| ||| || || || |||||||| | ||| |
Sbjct 75077 GCACGCGTTCGACTTTGTCACCCCA------AATACCCACAGCAACACGCATTATCATGT 75130
Query 78523 GCTGAGGTCTTTCAACCGTCTT 78544
|||| || | |||||| ||||
Sbjct 75131 GCTGGGGACGTTCAACGATCTT 75152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694661740428320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |