Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq734 118 2e-21
seq160 96.9 8e-15
seq357 84.2 5e-11
>seq734
Length=84471
Score = 118 bits (130), Expect = 2e-21
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||| |||||||||||||| || ||||||||||| |||| || || | ||||| ||
Sbjct 21465 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 21524
Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013
|| ||||| || || || || || | ||||||||||| | || || ||||| || |
Sbjct 21525 AGTTGCTTT--CCAGCAAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCT 21582
Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073
| || || ||||| | || | | | || || ||||||||| || ||||| || |
Sbjct 21583 GGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTACTTCGAGGGTAATGGTCT 21642
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || |||||||| ||||||| |||||
Sbjct 21643 TTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 109 bits (120), Expect = 1e-18
Identities = 152/210 (72%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||||||||| ||||| || ||||| |||| || || | ||||| || |
Sbjct 21239 CAAG-TGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGATAGGGTGCGGCCATCCTCAA 21297
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || ||||| || || | ||||||||||| | || || ||||| || ||
Sbjct 21298 GCTGCTTT--CCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 21355
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || ||||| | || | | | || ||| ||| || || || ||||| || ||
Sbjct 21356 GATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCTT 21415
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || |||||||| ||||||| |||||
Sbjct 21416 TCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 93.3 bits (102), Expect = 1e-13
Identities = 134/187 (72%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||| ||||||||||| ||||| ||||| ||||| |||| || || | ||||| ||
Sbjct 21693 ACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGATAGGGTGCGGCCATCCTCA 21752
Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013
|| ||||| || ||||| || || | ||||||||||| | || || ||||| || |
Sbjct 21753 AGCTGCTTT--CCAGCGAAAATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCT 21810
Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073
| || || ||||| | || | | | || ||| ||| || || || ||||| || |
Sbjct 21811 GGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACCTCGAGGGTAATGGTCT 21870
Query 152074 TGCCCGT 152080
|||| ||
Sbjct 21871 TGCCAGT 21877
>seq160
Length=36261
Score = 96.9 bits (106), Expect = 8e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || || || ||||| || ||||||||||| |||| | ||| | |||||
Sbjct 3392 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 3451
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | | ||||||||||| | || || ||||| ||
Sbjct 3452 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 3511
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | |||| ||| ||| || || || ||||| ||
Sbjct 3512 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 3571
Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095
|| ||||| || ||||| |||||
Sbjct 3572 TTACCCGTCAGGGTCTTGACGAA 3594
>seq357
Length=115873
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| || |||||||| || | | || | ||||| || || || || ||||||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||||| | || || ||||| || ||||| || |||||| | ||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| |||| || ||| || || || ||||| || || ||||| || ||||| |||||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 152097 ACCTGCATTTT 152107
| |||||| ||
Sbjct 6054 ATCTGCATCTT 6064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153808781153523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |