Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017- 03-03] 813 sequences; 26,062,404 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq160 174 3e-38 seq357 156 9e-33 seq734 150 4e-31 seq126 109 1e-18 >seq160 Length=36261 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| || || |||||||||||||| | Sbjct 3376 ACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3435 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 3436 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 3495 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 3496 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 3555 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || || ||||||||||||| ||||| ||||| Sbjct 3556 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594 >seq357 Length=115873 Score = 156 bits (172), Expect = 9e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||||| || |||||||||||||| || || || || || |||||| Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| || ||||| | || || | ||| Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||||||||| | || || ||||| || |||||||||||||| | ||||| ||||| Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053 Query 283092 ATCTGCATTTTCATATACA 283110 |||||||| || | |||| Sbjct 6054 ATCTGCATCTTGACCTACA 6072 >seq734 Length=84471 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | || || || |||||||||||||| | Sbjct 21446 ACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 21505 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || || ||||| || | ||| || ||||| || Sbjct 21506 TAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGG 21565 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | || || || || || | || || Sbjct 21566 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTAC 21625 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 21626 TTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | |||| || | || || ||||| || |||||||| | Sbjct 21219 CCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGAT 21278 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || || | ||| || ||||| ||| Sbjct 21279 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21338 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | || || || ||||||| || || Sbjct 21339 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21398 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 21399 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || || || | || |||||| ||||| |||||||| | Sbjct 21674 ACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGA 21733 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || || | ||| || ||||| || Sbjct 21734 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21793 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | || || || ||||||| || || Sbjct 21794 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21853 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| || || ||||| || |||| Sbjct 21854 CTCGAGGGTAATGGTCTTGCCAGTCA 21879 >seq126 Length=40607 Score = 109 bits (120), Expect = 1e-18 Identities = 176/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213 ||| || | ||| |||| || | |||| | || ||||||||| | || ||| | Sbjct 38058 GTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTG 37999 Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273 || || |||| | || ||||| || ||||| ||| |||||| || || || || ||| Sbjct 37998 CCCTGTGGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATACATTGAGTTTGTTGCT 37939 Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333 || || | | || || ||||| ||||||| || || ||| ||||||||||| Sbjct 37938 GACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGAC 37879 Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393 || |||||| ||| || ||| || || || |||||||| || ||||||||| | || Sbjct 37878 TTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGAC 37819 Query 230394 TATCA-AAGGCC 230404 || || |||||| Sbjct 37818 TACCAGAAGGCC 37807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728296575702