Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq160 174 3e-38
seq357 156 9e-33
seq734 150 4e-31
seq126 109 1e-18
>seq160
Length=36261
Score = 174 bits (192), Expect = 3e-38
Identities = 170/219 (78%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || || || | ||| || || |||||||||||||| |
Sbjct 3376 ACCACCACGTAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3435
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || ||||||||||| || || ||||| ||
Sbjct 3436 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 3495
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| |||||
Sbjct 3496 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 3555
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || ||||||||||||| ||||| |||||
Sbjct 3556 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 3594
>seq357
Length=115873
Score = 156 bits (172), Expect = 9e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||||| || |||||||||||||| || || || || || ||||||
Sbjct 5874 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 5933
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| || ||||| | || || | |||
Sbjct 5934 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 5993
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||||||||||| | || || ||||| || |||||||||||||| | ||||| |||||
Sbjct 5994 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6053
Query 283092 ATCTGCATTTTCATATACA 283110
|||||||| || | ||||
Sbjct 6054 ATCTGCATCTTGACCTACA 6072
>seq734
Length=84471
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | || || || | || || || |||||||||||||| |
Sbjct 21446 ACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 21505
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| ||||| || || ||||| || | ||| || ||||| ||
Sbjct 21506 TAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGGGG 21565
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| | || ||| | || || || || || | || ||
Sbjct 21566 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCTAC 21625
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||| || || ||||| || || | |||||| ||||| || |||||
Sbjct 21626 TTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
Score = 143 bits (158), Expect = 6e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || | |||| || | || || ||||| || |||||||| |
Sbjct 21219 CCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGAT 21278
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || || || | ||| || ||||| |||
Sbjct 21279 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21338
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||| | || ||| | || || || ||||||| || ||
Sbjct 21339 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21398
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| || || | |||||| ||||| || |||||
Sbjct 21399 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | || || || | || |||||| ||||| |||||||| |
Sbjct 21674 ACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCGGA 21733
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || || || | ||| || ||||| ||
Sbjct 21734 TAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGG 21793
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| | || ||| | || || || ||||||| || ||
Sbjct 21794 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCAC 21853
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||||| || || ||||| || ||||
Sbjct 21854 CTCGAGGGTAATGGTCTTGCCAGTCA 21879
>seq126
Length=40607
Score = 109 bits (120), Expect = 1e-18
Identities = 176/252 (70%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213
||| || | ||| |||| || | |||| | || ||||||||| | || ||| |
Sbjct 38058 GTGCAAAAGATCATCACTGACGCCGTTGTGATCGAGAAGGAGTTCCTCACGGAGGCTCTG 37999
Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273
|| || |||| | || ||||| || ||||| ||| |||||| || || || || |||
Sbjct 37998 CCCTGTGGTCTACTGGGAATGAACGCCGATCTGATGAAGCAATACATTGAGTTTGTTGCT 37939
Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333
|| || | | || || ||||| ||||||| || || ||| |||||||||||
Sbjct 37938 GACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTTTACCGTGCCACGAACCCCTTCGAC 37879
Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393
|| |||||| ||| || ||| || || || |||||||| || ||||||||| | ||
Sbjct 37878 TTCATGGAGAACATCTCGCTCGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGAC 37819
Query 230394 TATCA-AAGGCC 230404
|| || ||||||
Sbjct 37818 TACCAGAAGGCC 37807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046728296575702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |