Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq734 122 6e-23
seq160 118 8e-22
seq357 111 1e-19
>seq734
Length=84471
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | ||| |||| |||||| || ||||||||| || ||||| ||||
Sbjct 21219 CCACCACGCAGACGCAAAACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAGTCGGAT 21278
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || || |||||||| || || || || | ||||||||| || | ||
Sbjct 21279 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGA 21338
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| ||| ||||| ||| ||||| ||| | | | ||||| || | || ||||||
Sbjct 21339 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCCACC 21398
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | ||||| |||||||| || || ||||| ||||||||||||||
Sbjct 21399 TCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21445
Score = 120 bits (132), Expect = 2e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| || |||||||| || |||||| |||||||||||
Sbjct 21440 TTGCATACCACCACGTAGACGCAAAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTA 21499
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || ||| | || || || ||||| || ||||| || | ||||||||| ||
Sbjct 21500 GTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGACGCTGCTGGTC 21559
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
| || | ||| ||||| ||| ||||| ||| | | | ||||| |||| ||
Sbjct 21560 CGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGA 21619
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | ||||| |||||||| || || ||||| ||||||||||||||
Sbjct 21620 CTCTACTTCGAGGGTAATGGTCTTTCCAGTTAGAGTCTTGACGAAGATTTGCAT 21673
>seq160
Length=36261
Score = 118 bits (130), Expect = 8e-22
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| |||||| ||||||||||| |||| || ||| | || ||
Sbjct 3395 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCA 3454
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||||||||| |||||||| || | || | || ||||| |||
Sbjct 3455 AGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 3514
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||| | || || ||||||| ||||| |||||
Sbjct 3515 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTA 3574
Query 44309 CCCGTGAGGGTCTTCACGAA 44328
||||| |||||||| |||||
Sbjct 3575 CCCGTCAGGGTCTTGACGAA 3594
>seq357
Length=115873
Score = 111 bits (122), Expect = 1e-19
Identities = 141/192 (73%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| || | || ||| | || ||||||||||| || || ||||
Sbjct 5872 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 5931
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | ||| | || ||||| ||| ||||| ||| || |||
Sbjct 5932 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 5991
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||||||||| ||||| |||||||| ||
Sbjct 5992 --CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 6049
Query 44326 GAAGATTTGCAT 44337
||| || |||||
Sbjct 6050 GAAAATCTGCAT 6061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359986833057621
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |