Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20harringtonii_20[genbank_20GCA_5F002018265.1_202017-
03-03] 813 sequences; 26,062,404 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq734 140 8e-28
seq357 132 1e-25
seq160 123 6e-23
>seq734
Length=84471
Score = 140 bits (154), Expect = 8e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || || |||||||||||||| || ||
Sbjct 21442 CAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCGGAT 21383
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || || || |||||||||||
Sbjct 21382 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 21323
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| ||||| ||||| || ||||| | || || |||| || || |
Sbjct 21322 CGTCTCATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTATCCGACTACAATATT 21263
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| || || || || || | ||||||
Sbjct 21262 CAAAAGGAGTCTACTCTTCACTTGGTTTTG 21233
Score = 136 bits (150), Expect = 1e-26
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || || |||||||| || || || ||
Sbjct 21670 CAAATCTTCGTCAAGACTCTAACTGGAAAGACCATTACCCTCGAAGTAGAGTCATCCGAT 21611
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || || || |||||||||||
Sbjct 21610 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAG 21551
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || ||||| || || || ||||| | || || |||| || ||| ||
Sbjct 21550 CGTCTCATTTTTGCTGGAAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATC 21491
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || || || |||||||||
Sbjct 21490 CAGAAGGAGTCTACTCTTCACCTTGTTTTG 21461
Score = 134 bits (148), Expect = 3e-26
Identities = 143/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || |||||||||||||| || || ||||| || ||||||||
Sbjct 21877 ACTGGCAAGACCATTACCCTCGAGGTGGAGTCTTCGGATACCATTGACAACGTCAAGTCC 21818
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || || ||||||||||| || || || ||||| |||||
Sbjct 21817 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGTCTCATTTTCGCTGGAAAG 21758
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || |||| || || |||| |||||||| || || ||
Sbjct 21757 CAGCTTGAGGATGGCCGCACCCTATCCGACTACAATATCCAGAAAGAATCTACTCTTCAC 21698
Query 178125 CTTGTTTTG 178133
|||||||||
Sbjct 21697 CTTGTTTTG 21689
>seq357
Length=115873
Score = 132 bits (146), Expect = 1e-25
Identities = 131/169 (78%), Gaps = 3/169 (2%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 6069 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 6013
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||| ||||| || ||||| |||||||||||||| || || || |
Sbjct 6012 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTC 5953
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
||||||||||||| || || |||||||| || || ||||| || |||||
Sbjct 5952 CTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 5904
>seq160
Length=36261
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 3595 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 3536
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || || ||||||||||| || |
Sbjct 3535 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 3476
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 3475 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 3416
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || |||||
Sbjct 3415 GGAGTCCACCCTCCACCTTGT 3395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203718661258722
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |