Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq116 143 3e-29
>seq116
Length=83673
Score = 143 bits (158), Expect = 3e-29
Identities = 463/712 (65%), Gaps = 30/712 (4%)
Strand=Plus/Plus
Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 54032
|||| || || ||||||| || ||||| | | ||| || |||| |||| || |
Sbjct 76445 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 76501
Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092
| ||||| || | || ||||| || || | ||||| || | | | ||| |
Sbjct 76502 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 76561
Query 54093 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151
| ||||| ||||| |||| ||||||||| | | | ||||| |||||| || ||
Sbjct 76562 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 76620
Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211
| || |||| | ||||||| || |||||||| ||||| || | || | ||||||
Sbjct 76621 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 76680
Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271
|| || |||| | | ||| |||| || || || || | ||| || || || | ||
Sbjct 76681 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 76740
Query 54272 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329
|| ||| ||||||||||| | |||| ||||| || || || ||||| || |
Sbjct 76741 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 76798
Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389
| || | || || || | ||||| || |||||||| || || |||||| ||||||
Sbjct 76799 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 76858
Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449
| ||| ||||| ||||| || | ||| || |||||||| | ||||| |
Sbjct 76859 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 76918
Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT--------CTCGATAG-CTG 54500
| ||||| || || | || ||| | || ||||| || | |||| | ||
Sbjct 76919 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 76978
Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560
||| | |||| ||| || || || |||||||||| ||||||||| || | |
Sbjct 76979 TGTC---ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCT 77029
Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620
|||| ||||| | | ||| || | ||| || || | || ||||| ||||| |
Sbjct 77030 CAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGT 77089
Query 54621 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
| | ||| ||||| || ||||| | ||| | |||| || | ||||||
Sbjct 77090 ACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTT 77141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593714326910400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |