Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq116 143 3e-29 >seq116 Length=83673 Score = 143 bits (158), Expect = 3e-29 Identities = 463/712 (65%), Gaps = 30/712 (4%) Strand=Plus/Plus Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 54032 |||| || || ||||||| || ||||| | | ||| || |||| |||| || | Sbjct 76445 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 76501 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092 | ||||| || | || ||||| || || | ||||| || | | | ||| | Sbjct 76502 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 76561 Query 54093 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 | ||||| ||||| |||| ||||||||| | | | ||||| |||||| || || Sbjct 76562 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 76620 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 | || |||| | ||||||| || |||||||| ||||| || | || | |||||| Sbjct 76621 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 76680 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 || || |||| | | ||| |||| || || || || | ||| || || || | || Sbjct 76681 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 76740 Query 54272 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 || ||| ||||||||||| | |||| ||||| || || || ||||| || | Sbjct 76741 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 76798 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | || | || || || | ||||| || |||||||| || || |||||| |||||| Sbjct 76799 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 76858 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | ||| ||||| ||||| || | ||| || |||||||| | ||||| | Sbjct 76859 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 76918 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT--------CTCGATAG-CTG 54500 | ||||| || || | || ||| | || ||||| || | |||| | || Sbjct 76919 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 76978 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 ||| | |||| ||| || || || |||||||||| ||||||||| || | | Sbjct 76979 TGTC---ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCT 77029 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620 |||| ||||| | | ||| || | ||| || || | || ||||| ||||| | Sbjct 77030 CAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGT 77089 Query 54621 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | | ||| ||||| || ||||| | ||| | |||| || | |||||| Sbjct 77090 ACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTT 77141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714326910400