Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq105 313 3e-80
seq28 127 2e-24
seq100 114 1e-20
seq61 113 5e-20
>seq105
Length=86313
Score = 313 bits (346), Expect = 3e-80
Identities = 520/739 (70%), Gaps = 19/739 (3%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || |||
Sbjct 44053 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 44112
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | || ||||| | |||||| | ||||||
Sbjct 44113 TCTAAGGATCTCCA-CGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTC 44171
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| || || ||| || |||||||||||||| ||||| || |||||
Sbjct 44172 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 44231
Query 116812 TTTCGCTCAG--GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869
|| ||||| ||||||||| | ||||||| || ||||||||||| || ||||||
Sbjct 44232 CTT--CTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATG 44289
Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTC 116925
||||| ||| | ||||| |||| || ||| || || ||||| ||| | | || |
Sbjct 44290 ATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGC-C 44348
Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985
||| | | | | | | |||| || ||||| || || || || ||| || ||
Sbjct 44349 CTCGCA-GCGCACATAC--CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAA 44405
Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045
|||||| ||||| ||| |||||| ||| || ||| | | || | | ||||||| ||
Sbjct 44406 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGT 44465
Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105
||||| || || ||||||||| |||| || || ||| |||||| |||| || |||||
Sbjct 44466 TGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCT 44525
Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
| || || || |||||||| || ||||| ||| |||||||| || || | || ||
Sbjct 44526 CCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGA 44585
Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225
||| ||||| ||||||||| || |||||||| |||| || | || || |||
Sbjct 44586 GGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAA 44645
Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285
|| | || ||||| |||| || || |||| |||||| || ||||| |||||
Sbjct 44646 GGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGA 44705
Query 117286 AGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344
|| ||||| ||| ||||||| ||| | || || |||| ||| ||||| ||||
Sbjct 44706 GGCTCTGCC-CTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGT 44764
Query 117345 TCGTCGCCGACAGGCTGCT 117363
| || || ||| | |||||
Sbjct 44765 TTGTTGCTGACCGCCTGCT 44783
>seq28
Length=151797
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | |||||||| ||||| ||| |||| ||||| || |
Sbjct 108778 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 108837
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | || || ||||| ||||| | ||||||
Sbjct 108838 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 108897
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || || ||||| || || | ||||||||| ||||||||||
Sbjct 108898 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 108957
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 108958 ATCCAGAAGGAGTCTACTCTTCA 108980
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| ||||||||| |||| || || || | || | | | |||| | |||
Sbjct 108062 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCGGATACTATTGACAACGTT-AAGTC 108120
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| ||||| |||||||||| || ||||||| ||| || ||
Sbjct 108121 TAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAA 108180
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || || | |||||||| |||||||||||| ||||||||| | || || ||
Sbjct 108181 GCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCA 108240
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||| | ||| || | || ||
Sbjct 108241 TCTAGTGCTCCGCCTGCGTGGTGG 108264
Score = 105 bits (116), Expect = 7e-18
Identities = 133/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760
|| || || || || || || ||||| ||| |||| ||||| || |||||| | | |
Sbjct 108334 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 108393
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| || || | ||||| |||||||| || |||||||||| || |||||
Sbjct 108394 AACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCAT 108452
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| ||| || || ||||| || || | || ||||| |||||||||||| ||||| ||
Sbjct 108453 CTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATTCAGAAAGA 108512
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | |||||||| ||||| ||| |||| ||||| || |
Sbjct 108550 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 108609
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | || || ||||| |||||| |||| |||
Sbjct 108610 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 108669
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || || || ||||| || || | || ||||| |||||||||
Sbjct 108670 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTGTCGGACTACAAC 108729
Query 40870 ATCCAGAAGGA 40880
|| ||||| ||
Sbjct 108730 ATTCAGAAAGA 108740
>seq100
Length=89839
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 17019 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 17078
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | ||||| || |||| ||||| |||||||| ||| |||||
Sbjct 17079 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 17138
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| |||||||| || | || ||||| ||||||
Sbjct 17139 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTAC 17198
Query 40867 AACATCCAGAAGG 40879
||||| |||||||
Sbjct 17199 AACATTCAGAAGG 17211
>seq61
Length=115161
Score = 113 bits (124), Expect = 5e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| | | |||| |
Sbjct 22480 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 22421
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| |||||||| ||| |||||||||| || |
Sbjct 22420 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 22362
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| || || || ||||| || || | ||||| || ||||||||||||||||||
Sbjct 22361 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 22302
Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| |||| || || || || ||||| || | || ||
Sbjct 22301 GGAGTCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 22263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212888564800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |