Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq105 150 2e-31 seq116 149 8e-31 >seq105 Length=86313 Score = 150 bits (166), Expect = 2e-31 Identities = 380/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || || || ||| |||||| ||||| || | | ||| | ||||| || Sbjct 44618 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 44559 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750 || || ||||| || || || ||||||||||||| || | || || ||| || | | Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 44440 Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44439 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 44380 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33864 |||||||| || || || | | | | | | || || | || || || |||| Sbjct 44379 AATGGCATTGAACAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 44324 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 || || |||| || || |||||||| || ||||| || |||||||| || | Sbjct 44323 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 44264 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 ||||||| |||||||| || | || || || | | |||||| || || || | Sbjct 44263 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 44204 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 34043 ||||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 44203 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 44145 Query 34044 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 44144 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 44085 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 || ||||| ||||| || ||||| | |||||| Sbjct 44084 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 44053 >seq116 Length=83673 Score = 149 bits (164), Expect = 8e-31 Identities = 508/778 (65%), Gaps = 23/778 (3%) Strand=Plus/Plus Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 |||| ||||||||| | | | ||||| |||||| || || | || ||||| | ||| Sbjct 76581 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 76639 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 |||| || |||||||| ||||| || | || | |||||||| || |||| | | || Sbjct 76640 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 76699 Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528 | |||| || ||||| || |||| || || || | || || ||| ||||||||| Sbjct 76700 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 76759 Query 63529 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 || | |||| ||||| || || || ||||| || || || | || || || Sbjct 76760 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 76817 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 | || || || ||||| || ||||| ||||| |||||| | ||| ||||| ||| Sbjct 76818 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 76877 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 || || | | ||| || |||||||| | ||||| || ||||| || || | || Sbjct 76878 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 76937 Query 63707 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63760 ||| | || ||||| || |||| | || | || | | |||| ||| Sbjct 76938 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 76991 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || |||||||||| ||||||||| || | |||||||| || | | ||| Sbjct 76992 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 77051 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | | ||| || || | || ||||| ||||| || | ||| ||||| || || Sbjct 77052 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 77111 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATAC 63939 ||| | ||| | || | |||| |||||| | ||| | | ||| || Sbjct 77112 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 77170 Query 63940 TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63999 | || || || || || ||| | || || |||||||||| | | | || || Sbjct 77171 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 77230 Query 64000 TCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCG 64058 ||| || | || | || || |||| |||||| ||||| || | || || | |||| Sbjct 77231 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCG 77289 Query 64059 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 || || ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 77290 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 77346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 302/470 (64%), Gaps = 3/470 (1%) Strand=Plus/Plus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | |||||||| || || || | || | | |||||||| |||||||| Sbjct 75256 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 75315 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || ||||| || |||| || ||| ||||| || || | ||| | Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495 Query 62274 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || | |||| | | | | ||||||||||| ||| || | ||||| | |||||| Sbjct 75496 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 75555 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || | ||| |||||| ||| || | | ||||| ||||| || || Sbjct 75556 ATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGACC 75615 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||| || |||| | || | || |||||| || || || ||||| | || Sbjct 75616 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCAC 75675 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 ||||| || |||| ||| || | || || || ||||| ||||| || Sbjct 75676 TCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 75725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809884734400