Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq105 107 1e-18 >seq105 Length=86313 Score = 107 bits (118), Expect = 1e-18 Identities = 277/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| ||||| || ||| || | || || || | || || |||| |||||||| Sbjct 44467 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTC 44526 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || ||| |||||||| || || | || || |||||| | ||| ||||| || Sbjct 44527 CGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAG 44586 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 || || ||| ||||||||||| ||||||| ||| || ||| || | || Sbjct 44587 GGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAAG 44646 Query 22930 GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGAG 22989 ||| || || | ||||| |||||||||| | || |||| || ||| | ||| Sbjct 44647 GACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAG 44706 Query 22990 GCACTAAAGACACCC---CTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAG 23046 || || | | | || || || ||||| ||| |||| | |||||| || Sbjct 44707 GCTCT---GCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAG 44763 Query 23047 TTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCC--- 23103 |||||||| || |||||||| | ||| || || | | ||| ||| || |||| Sbjct 44764 TTTGTTGCTGACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTGT---ACCGTGCCACA 44820 Query 23104 AATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || || || || |||||||| ||||| | || | | || || || ||||||||||| Sbjct 44821 AACCCCTTCGACTTCATGGAGAACATCTCGC-TCGGCGGCAAGACTAACTTCTTTGA 44876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356229345234940