Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq116 154 2e-32 >seq116 Length=83673 Score = 154 bits (170), Expect = 2e-32 Identities = 741/1157 (64%), Gaps = 32/1157 (3%) Strand=Plus/Plus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAAT 71753 ||| | |||||| || || || || || ||||||| || |||| || | ||||| Sbjct 76173 GGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG---GGCACAGTACTCGATAAT 76229 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 76230 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 76289 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || || || || ||||| || | ||||| ||| |||||| || | ||| || Sbjct 76290 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 76349 Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTC--GTATT 71929 | ||| | | || | ||||| | | | || | | | ||| ||| ||| | Sbjct 76350 ATACCACA-GTTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCGTACT 76405 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 | ||| | || ||||| || || | || | || || || |||||||| | Sbjct 76406 TTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGG 76465 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 | ||||| | | ||| || ||| | | || || ||||| || | || |||| Sbjct 76466 GGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCC 76525 Query 72050 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT-TAAGA 72108 | || || | ||||| || | | | || || ||||| ||||| |||| Sbjct 76526 ACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG- 76584 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | | ||||| |||||| || || | || ||||| | |||| || Sbjct 76585 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGT 76644 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || |||||||| ||||| || | || | |||||||| || |||| | | ||| ||| Sbjct 76645 CGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGA 76704 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286 | || || || || | ||| || || || | || || ||| ||||||||||| Sbjct 76705 ACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGG 76764 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || |||| ||||| || || || ||||| || || || | || || || | | Sbjct 76765 TGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 76822 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 |||| || |||||||| || || |||||| |||||| | ||| ||||| ||||| | Sbjct 76823 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 76882 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | ||| || |||||||| | ||||| || ||||| || || | || || Sbjct 76883 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 76942 Query 72467 ACAGTAGATTGTACGTCTCAA-TAGCTGAT--TCTATATCCCATTGATGTATTCCTACCG 72523 ||| || ||||| || |||| | ||| || | || | | || || || | Sbjct 76943 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAA---ATACCCACAG 76999 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 | |||||||||| ||| ||||| || | ||||| ||||| || | ||| | | || Sbjct 77000 CAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGT 77059 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || || | || ||||| ||||| || | ||| ||||| || ||||| | || Sbjct 77060 ACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAA 77119 Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701 | | || | || | |||||| | ||| | | ||| || ||| || || Sbjct 77120 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 77177 Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || || || ||| | || || |||||||||| | | | || || ||| Sbjct 77178 CATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACACCAC-CG 77236 Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 || | || | || || |||| |||||| ||||| || || || || | |||||| || | Sbjct 77237 ACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGA 77296 Query 72821 TGGCATAATCTGGATGT 72837 |||||||||| |||||| Sbjct 77297 TGGCATAATCGGGATGT 77313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 346/537 (64%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || || || || | | || || | |||||||| ||||||||| Sbjct 75256 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 75315 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||| || ||| ||||| || || | ||| | || Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 ||||| |||||||| || | ||||| ||| || ||||| || || | || ||| Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | |||| | | | | ||||||||||| ||| || |||||||| | ||| || Sbjct 75496 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 75555 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | ||| |||||| ||| || | | ||||| || || || || Sbjct 75556 ATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGACC 75615 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || |||| | || | || |||||| || || || ||||| | || Sbjct 75616 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCAC 75675 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| || |||| ||| || | || || || ||||| ||||| || | ||| | Sbjct 75676 TCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAA 75735 Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | | |||||| || | || || || |||||||| ||| | ||| ||||| Sbjct 75736 TTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGATC 75791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130978544800