Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq105 237 2e-57
seq3 134 2e-26
>seq105
Length=86313
Score = 237 bits (262), Expect = 2e-57
Identities = 576/863 (67%), Gaps = 31/863 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||||||||| ||||| | || ||| | ||||||
Sbjct 44053 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 44112
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| || |||| ||| | | ||| ||| || |||| | || || ||
Sbjct 44113 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 44172
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| | ||||||||||| | ||| ||||| ||||||||||| ||||| ||||| ||
Sbjct 44173 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGA-GCG 44231
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||||| ||| || || || |||| ||||| ||||| ||||| ||||||||
Sbjct 44232 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 44291
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314
|| ||| | ||||| |||| ||||| |||||||||| ||||| || | |
Sbjct 44292 GGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTC 44351
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374
||| || | | || || || || || || ||||| | || | || || |||||
Sbjct 44352 GCAGCGCACATAC---CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGC 44408
Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434
| |||| | ||||||| ||| | |||| ||| ||| | | || || ||
Sbjct 44409 CGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGC 44468
Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494
|| || || || ||||||||||| || || || || || ||||||| ||||||
Sbjct 44469 CTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTCCG 44528
Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554
||||| || |||||||| || ||||| | |||||| |||| ||||| || |||||
Sbjct 44529 CAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGG 44588
Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612
||| ||| |||||||| || ||||| ||||| || | | | ||| || ||
Sbjct 44589 CCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAAGGA 44648
Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672
| | | ||||| ||||| || |||||||| ||| || | |||||
Sbjct 44649 CCTTGTG--CAAAAGATCATC---------ACTGATGCCGTCGTGATCGAGAAGGAGTTC 44697
Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732
|| ||||| | || || | | || | || |||||| | || ||| |||||
Sbjct 44698 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTAC 44757
Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACA 125787
|| |||||||| || || || || || |||| | ||| || ||| | |||
Sbjct 44758 ATTGAGTTTGTTGCTGACCGCCTGCT-----TGTTGCTCTAGGCAACGAGAAGGTGTACC 44812
Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847
|||| || ||||| || |||||| | ||| || || | || ||||| ||||| |
Sbjct 44813 GTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCT 44872
Query 125848 TCGAGAAGAAGGTCAGCGAGTAC 125870
| |||||| ||| |||| |||
Sbjct 44873 TTGAGAAGCGTGTCGGCGACTAC 44895
>seq3
Length=270739
Score = 134 bits (148), Expect = 2e-26
Identities = 173/233 (74%), Gaps = 7/233 (3%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||||| ||||| || ||||| || |||||| | || | || || ||||||| ||
Sbjct 145331 GGCGATCTAGGGCCTGTATACGGCTTTCAGTGGCGCCATTTCGGAGCCGAGTATGTGGAT 145390
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCT 70185
| ||||||||||| ||||||| ||||||||||| | || || | |||| ||| ||
Sbjct 145391 GCCAAGACAGACTATACGGGTCAAGGTGTTGATCAGCTGGCTGA-AGTCATCCACAAACT 145449
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
||||||||| || ||| || | ||| | ||| | | ||||| ||||| |||||| |
Sbjct 145450 CAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAA 145509
Query 70246 CCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTAC 70294
| ||||| || |||||||| ||| ||||| || ||||| || |||||||
Sbjct 145510 GAAGATGGCGCTGCCACCGTGCCACATGTTT-GCGCAGTTCTATGTCTCGTAC 145561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741050122024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |