Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq105 237 2e-57 seq3 134 2e-26 >seq105 Length=86313 Score = 237 bits (262), Expect = 2e-57 Identities = 576/863 (67%), Gaps = 31/863 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||||||||| ||||| | || ||| | |||||| Sbjct 44053 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 44112 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | ||| ||| || |||| | || || || Sbjct 44113 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 44172 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | ||||||||||| | ||| ||||| ||||||||||| ||||| ||||| || Sbjct 44173 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGA-GCG 44231 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| ||| || || || |||| ||||| ||||| ||||| |||||||| Sbjct 44232 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 44291 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314 || ||| | ||||| |||| ||||| |||||||||| ||||| || | | Sbjct 44292 GGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTC 44351 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| || | | || || || || || || ||||| | || | || || ||||| Sbjct 44352 GCAGCGCACATAC---CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGC 44408 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| ||| | |||| ||| ||| | | || || || Sbjct 44409 CGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGC 44468 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || || || ||||||||||| || || || || || ||||||| |||||| Sbjct 44469 CTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTCCG 44528 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||| || |||||||| || ||||| | |||||| |||| ||||| || ||||| Sbjct 44529 CAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGG 44588 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612 ||| ||| |||||||| || ||||| ||||| || | | | ||| || || Sbjct 44589 CCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAAGGA 44648 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 | | | ||||| ||||| || |||||||| ||| || | ||||| Sbjct 44649 CCTTGTG--CAAAAGATCATC---------ACTGATGCCGTCGTGATCGAGAAGGAGTTC 44697 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || ||||| | || || | | || | || |||||| | || ||| ||||| Sbjct 44698 CTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTAC 44757 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACA 125787 || |||||||| || || || || || |||| | ||| || ||| | ||| Sbjct 44758 ATTGAGTTTGTTGCTGACCGCCTGCT-----TGTTGCTCTAGGCAACGAGAAGGTGTACC 44812 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| | Sbjct 44813 GTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCT 44872 Query 125848 TCGAGAAGAAGGTCAGCGAGTAC 125870 | |||||| ||| |||| ||| Sbjct 44873 TTGAGAAGCGTGTCGGCGACTAC 44895 >seq3 Length=270739 Score = 134 bits (148), Expect = 2e-26 Identities = 173/233 (74%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| ||||| || ||||| || |||||| | || | || || ||||||| || Sbjct 145331 GGCGATCTAGGGCCTGTATACGGCTTTCAGTGGCGCCATTTCGGAGCCGAGTATGTGGAT 145390 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCT 70185 | ||||||||||| ||||||| ||||||||||| | || || | |||| ||| || Sbjct 145391 GCCAAGACAGACTATACGGGTCAAGGTGTTGATCAGCTGGCTGA-AGTCATCCACAAACT 145449 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||||||| || ||| || | ||| | ||| | | ||||| ||||| |||||| | Sbjct 145450 CAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAACCCTGCGGATTTGAA 145509 Query 70246 CCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTAC 70294 | ||||| || |||||||| ||| ||||| || ||||| || ||||||| Sbjct 145510 GAAGATGGCGCTGCCACCGTGCCACATGTTT-GCGCAGTTCTATGTCTCGTAC 145561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050122024800