Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq28 122 2e-22
seq100 111 4e-19
seq105 87.8 4e-12
>seq28
Length=151797
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||||||||||||||| || ||||| || || || | || || || || || ||||||
Sbjct 108746 GTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGAGCTGCTTTCCA 108687
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||| ||||| || || || || || |||||||| ||||| | ||
Sbjct 108686 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTG 108627
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| | || || || || ||||| ||||| || || | ||
Sbjct 108626 ACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTC 108567
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 108566 TTGACGAAGATTTGCAT 108550
Score = 107 bits (118), Expect = 4e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||||||||||||||| || ||||| || || || | || || || || || ||||||
Sbjct 108518 GTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 108459
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || ||||| || || || || ||||| ||||| | ||
Sbjct 108458 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 108399
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| ||| | || || || || ||||| ||||| || ||||| ||
Sbjct 108398 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTC 108339
Query 104543 TTTACAA 104549
|| ||||
Sbjct 108338 TTGACAA 108332
>seq100
Length=89839
Score = 111 bits (122), Expect = 4e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|||||||| || |||||||| || || | || || || || || || ||||| || ||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491
|| | ||| || || || || || || || || ||||||||||| | || ||||| ||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
| || || | ||| || ||||| || ||||| |||||||| ||||| || || || ||
Sbjct 17089 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 17031
Query 104551 TATCTGCATTTTG 104563
|||||||| |||
Sbjct 17030 AATCTGCATCTTG 17018
>seq105
Length=86313
Score = 87.8 bits (96), Expect = 4e-12
Identities = 176/258 (68%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792
|| ||| ||||||||| |||||| || || || ||||||| || || | ||||||
Sbjct 44053 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 44112
Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAA-AGAAGATTTATATC 268848
||| | || | || ||||| || | | || ||| || || | || || ||
Sbjct 44113 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTAC-TTCATCTC 44171
Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908
| |||||||| || ||||| | |||||| ||||| ||||||||||| || |||
Sbjct 44172 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 44231
Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968
|||| ||||| ||||| || || ||| | || || ||||| |||||||| ||
Sbjct 44232 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 44291
Query 268969 AGAAAATATTCATTCAGA 268986
||||| || || || ||
Sbjct 44292 GGAAAACATCCACTCTGA 44309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151383942753840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |