Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq28 122 2e-22 seq100 111 4e-19 seq105 87.8 4e-12 >seq28 Length=151797 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || ||||| || || || | || || || || || |||||| Sbjct 108746 GTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGAGCTGCTTTCCA 108687 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| || || || || || |||||||| ||||| | || Sbjct 108686 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTG 108627 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || || || || ||||| ||||| || || | || Sbjct 108626 ACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTC 108567 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 108566 TTGACGAAGATTTGCAT 108550 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || ||||| || || || | || || || || || |||||| Sbjct 108518 GTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCA 108459 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||| ||||| | || Sbjct 108458 GCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 108399 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || || || || ||||| ||||| || ||||| || Sbjct 108398 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTC 108339 Query 104543 TTTACAA 104549 || |||| Sbjct 108338 TTGACAA 108332 >seq100 Length=89839 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| || || | || || || || || || ||||| || || Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| ||||| || || || || Sbjct 17089 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 17031 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 17030 AATCTGCATCTTG 17018 >seq105 Length=86313 Score = 87.8 bits (96), Expect = 4e-12 Identities = 176/258 (68%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| ||||||||| |||||| || || || ||||||| || || | |||||| Sbjct 44053 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 44112 Query 268793 TCTTATGACTTAATAGATTGGAAAAA---TTTAAAACCAGAAGAA-AGAAGATTTATATC 268848 ||| | || | || ||||| || | | || ||| || || | || || || Sbjct 44113 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTAC-TTCATCTC 44171 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 | |||||||| || ||||| | |||||| ||||| ||||||||||| || ||| Sbjct 44172 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 44231 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 |||| ||||| ||||| || || ||| | || || ||||| |||||||| || Sbjct 44232 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 44291 Query 268969 AGAAAATATTCATTCAGA 268986 ||||| || || || || Sbjct 44292 GGAAAACATCCACTCTGA 44309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383942753840