Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq297 181 2e-41 seq3 109 9e-20 >seq297 Length=35180 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||| ||||| |||| Sbjct 12321 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCTGCTA 12379 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| || ||||||||||| ||||||||| |||| | || | ||||| || | Sbjct 12380 TTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATTTATGAGGAAA 12439 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | ||| |||||| | || |||| ||||||| || || |||| Sbjct 12440 CCCGTGGTGTTCTCAAGTCCTTCCTTGAAGGTGTAATCCGTGATGCTGTCACATACACCG 12499 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||||| ||||| | |||||||| |||| | |||| Sbjct 12500 AGCACGCCAAGCGCAAGACTGTTACCTCTCTGGATGTTGTCTATGCTCTGAAGAGACAAG 12559 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 12560 GCCGCACCCTGTACGGTTTCGGTGGTTAA 12588 >seq3 Length=270739 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 194393 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCCA 194335 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 194334 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 194293 Score = 98.7 bits (108), Expect = 2e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 |||| | || |||| ||||||| ||||| ||| | ||| |||||| || || || Sbjct 194228 CTCTTTAGTGATCTACGAAGAGACTCGTGGTGTCCTCAAGTCCTTCCTTGAGGGTGTCAT 194169 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || ||| ||| || ||| ||||||||||| || || ||||| || ||||| | ||| | Sbjct 194168 CCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTTACCTCGCTCGATGT 194109 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||||||| | || || || ||||||| | || ||||| || ||||| Sbjct 194108 CGTCTATGCCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 194057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074303979140