Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq297 181 2e-41
seq3 109 9e-20
>seq297
Length=35180
Score = 181 bits (200), Expect = 2e-41
Identities = 203/269 (75%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||| ||||| ||||
Sbjct 12321 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCTGCTA 12379
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| |||||||| || ||||||||||| ||||||||| |||| | || | ||||| || |
Sbjct 12380 TTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATTTATGAGGAAA 12439
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| |||| | ||| |||||| | || |||| ||||||| || || ||||
Sbjct 12440 CCCGTGGTGTTCTCAAGTCCTTCCTTGAAGGTGTAATCCGTGATGCTGTCACATACACCG 12499
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || |||||||| ||||| ||||| | |||||||| |||| | ||||
Sbjct 12500 AGCACGCCAAGCGCAAGACTGTTACCTCTCTGGATGTTGTCTATGCTCTGAAGAGACAAG 12559
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || ||||| || |||||
Sbjct 12560 GCCGCACCCTGTACGGTTTCGGTGGTTAA 12588
>seq3
Length=270739
Score = 109 bits (120), Expect = 9e-20
Identities = 87/102 (85%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || |
Sbjct 194393 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCCA 194335
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 194334 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 194293
Score = 98.7 bits (108), Expect = 2e-16
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587
|||| | || |||| ||||||| ||||| ||| | ||| |||||| || || ||
Sbjct 194228 CTCTTTAGTGATCTACGAAGAGACTCGTGGTGTCCTCAAGTCCTTCCTTGAGGGTGTCAT 194169
Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647
|| ||| ||| || ||| ||||||||||| || || ||||| || ||||| | ||| |
Sbjct 194168 CCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTTACCTCGCTCGATGT 194109
Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||||||||| | || || || ||||||| | || ||||| || |||||
Sbjct 194108 CGTCTATGCCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 194057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074303979140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |