Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq116 156 5e-33 seq105 147 3e-30 >seq116 Length=83673 Score = 156 bits (172), Expect = 5e-33 Identities = 596/918 (65%), Gaps = 32/918 (3%) Strand=Plus/Plus Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63219 |||| || || ||||||| || ||||| | | ||| || |||| |||| || | Sbjct 76445 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 76501 Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63279 | ||||| || | || ||||| || || | ||||| || | | | ||| | Sbjct 76502 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 76561 Query 63280 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338 | ||||| ||||| |||| ||||||||| | | | ||||| |||||| || || Sbjct 76562 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 76620 Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398 | || ||||| | ||||||| || |||||||| ||||| || | || | |||||| Sbjct 76621 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 76680 Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458 || || |||| | | ||| |||| || ||||| || |||| || || || | || Sbjct 76681 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 76740 Query 63459 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516 || ||| ||||||||||| | |||| ||||| || || || ||||| || | Sbjct 76741 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 76798 Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 | || | || || || | || || || || ||||| ||||| ||||| |||||| Sbjct 76799 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 76858 Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636 | ||| ||||| ||||| || | ||| || |||||||| | ||||| | Sbjct 76859 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 76918 Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTA 63693 | ||||| || || | || ||| | || ||||| || |||| | || | || Sbjct 76919 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 76978 Query 63694 T---ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | | |||| ||| || || || |||||||||| ||||||||| || | |||| Sbjct 76979 TGTCACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAA 77032 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | ||||| | | ||| | | ||| || || | || ||||| ||||| || | Sbjct 77033 CAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACT 77092 Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870 ||| ||||| || ||||| | ||| | |||| || | |||||| | ||| Sbjct 77093 GGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA 77152 Query 63871 CTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 | | ||| || ||| || || || || || ||| | || || ||||| Sbjct 77153 -TGCACTCAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAAC 77210 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGAT 63987 ||||| | | | || || ||| || | || | || || |||| |||||| |||| Sbjct 77211 ATAGTGGTAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGAT 77269 Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64046 | || || || || | |||||| || ||||||||||| ||||| |||| | || || | Sbjct 77270 TAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAG 77328 Query 64047 GCTGCTATTTCGGCTGCC 64064 || || ||||||| ||| Sbjct 77329 GCGGCAGTTTCGGCGGCC 77346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/317 (66%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | |||||||| || || || | || | | |||||||| |||||||| Sbjct 75256 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 75315 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || ||||| || |||| || ||| ||||| || || | ||| | Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495 Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 || | |||| | | | | ||||||||||| ||| || || ||||| | |||||| Sbjct 75496 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 75555 Query 62280 ATCTCATCATTCCATAA 62296 || | ||| |||||| Sbjct 75556 ATATTGTCAGACCATAA 75572 >seq105 Length=86313 Score = 147 bits (162), Expect = 3e-30 Identities = 379/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| |||||| ||||| || | | ||| || ||||| || Sbjct 44618 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 44559 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472 || || ||||| || || || ||||||||||||| || | || || ||| || | | Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 44440 Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44439 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 44380 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586 |||||||| || || || | | | | | | || || | || || || |||| Sbjct 44379 AATGGCATTGAACAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 44324 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646 || || |||| || || |||||||| || ||||| || |||||||| || | Sbjct 44323 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 44264 Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706 ||||||| ||||| || || | || || || | | |||||| || || || | Sbjct 44263 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 44204 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33765 | ||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 44203 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 44145 Query 33766 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 44144 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 44085 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||| ||||| || ||||| | |||||| Sbjct 44084 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 44053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939568896800