Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq116 156 5e-33
seq105 147 3e-30
>seq116
Length=83673
Score = 156 bits (172), Expect = 5e-33
Identities = 596/918 (65%), Gaps = 32/918 (3%)
Strand=Plus/Plus
Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63219
|||| || || ||||||| || ||||| | | ||| || |||| |||| || |
Sbjct 76445 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 76501
Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63279
| ||||| || | || ||||| || || | ||||| || | | | ||| |
Sbjct 76502 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 76561
Query 63280 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338
| ||||| ||||| |||| ||||||||| | | | ||||| |||||| || ||
Sbjct 76562 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 76620
Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398
| || ||||| | ||||||| || |||||||| ||||| || | || | ||||||
Sbjct 76621 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 76680
Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458
|| || |||| | | ||| |||| || ||||| || |||| || || || | ||
Sbjct 76681 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 76740
Query 63459 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516
|| ||| ||||||||||| | |||| ||||| || || || ||||| || |
Sbjct 76741 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 76798
Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576
| || | || || || | || || || || ||||| ||||| ||||| ||||||
Sbjct 76799 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 76858
Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636
| ||| ||||| ||||| || | ||| || |||||||| | ||||| |
Sbjct 76859 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 76918
Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTA 63693
| ||||| || || | || ||| | || ||||| || |||| | || | ||
Sbjct 76919 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 76978
Query 63694 T---ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750
| | |||| ||| || || || |||||||||| ||||||||| || | ||||
Sbjct 76979 TGTCACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAA 77032
Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810
| ||||| | | ||| | | ||| || || | || ||||| ||||| || |
Sbjct 77033 CAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACT 77092
Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870
||| ||||| || ||||| | ||| | |||| || | |||||| | |||
Sbjct 77093 GGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA 77152
Query 63871 CTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928
| | ||| || ||| || || || || || ||| | || || |||||
Sbjct 77153 -TGCACTCAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAAC 77210
Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGAT 63987
||||| | | | || || ||| || | || | || || |||| |||||| ||||
Sbjct 77211 ATAGTGGTAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGAT 77269
Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64046
| || || || || | |||||| || ||||||||||| ||||| |||| | || || |
Sbjct 77270 TAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAG 77328
Query 64047 GCTGCTATTTCGGCTGCC 64064
|| || ||||||| |||
Sbjct 77329 GCGGCAGTTTCGGCGGCC 77346
Score = 87.8 bits (96), Expect = 2e-12
Identities = 210/317 (66%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042
|||| ||| | |||||||| || || || | || | | |||||||| ||||||||
Sbjct 75256 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 75315
Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102
||||| || ||||| || |||| || ||| ||||| || || | ||| |
Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375
Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162
|||||| || || || || | ||| || ||| || ||||| || || | || |||
Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435
Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222
||||||| | | || || | ||| ||||||| || || || | ||||||
Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495
Query 62223 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279
|| | |||| | | | | ||||||||||| ||| || || ||||| | ||||||
Sbjct 75496 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 75555
Query 62280 ATCTCATCATTCCATAA 62296
|| | ||| ||||||
Sbjct 75556 ATATTGTCAGACCATAA 75572
>seq105
Length=86313
Score = 147 bits (162), Expect = 3e-30
Identities = 379/572 (66%), Gaps = 18/572 (3%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || || || ||| |||||| ||||| || | | ||| || ||||| ||
Sbjct 44618 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 44559
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472
|| || ||||| || || || ||||||||||||| || | || || ||| || | |
Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 44440
Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 44439 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 44380
Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586
|||||||| || || || | | | | | | || || | || || || ||||
Sbjct 44379 AATGGCATTGAACAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 44324
Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646
|| || |||| || || |||||||| || ||||| || |||||||| || |
Sbjct 44323 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 44264
Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706
||||||| ||||| || || | || || || | | |||||| || || || |
Sbjct 44263 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 44204
Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33765
| ||| ||| ||||| || || | | || || || || | |||||| ||||
Sbjct 44203 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 44145
Query 33766 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822
| || ||||| || | || ||| ||||| | ||| | || || | ||||| ||
Sbjct 44144 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 44085
Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
|| ||||| ||||| || ||||| | ||||||
Sbjct 44084 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 44053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622939568896800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |