Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq28 102 7e-17 >seq28 Length=151797 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060 |||| || || | || ||||| | |||||| ||||||||||| || ||||||||| | Sbjct 108332 TTGTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTG 108391 Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120 | | ||||| ||||| ||||| || ||||| ||||| || || ||| | || | Sbjct 108392 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCA 108451 Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180 | | || || ||||| || || |||| | | | | | ||| || |||||||| |||| Sbjct 108452 TCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATTCAGAAAG 108511 Query 24181 AATCTACAATTCATTTAGT 24199 ||||||| |||| || || Sbjct 108512 AATCTACTCTTCACTTGGT 108530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | |||||| ||||||||||| || Sbjct 108550 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 108609 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| || || || || || || || ||||| Sbjct 108610 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 108669 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| | || ||||| ||||| |||| | | | | | || || ||| Sbjct 108670 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTGTCGGACTACAAC 108729 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||||||||| |||| || || Sbjct 108730 ATTCAGAAAGAATCTACTCTTCACTTGGT 108758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | |||||| ||||||||||| || Sbjct 108778 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 108837 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| || || || || || |||||||| || Sbjct 108838 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCAG 108897 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| || || |||| | | | | || ||| || ||| Sbjct 108898 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 108957 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || ||||| |||| || || Sbjct 108958 ATCCAGAAGGAGTCTACTCTTCACTTGGT 108986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930864951900