Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq116 152 7e-32
seq105 123 3e-23
>seq116
Length=83673
Score = 152 bits (168), Expect = 7e-32
Identities = 509/778 (65%), Gaps = 23/778 (3%)
Strand=Plus/Plus
Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212
|||| ||||||||| | | | ||||| |||||| || || | || ||||| | |||
Sbjct 76581 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 76639
Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272
|||| || |||||||| ||||| || | || | |||||||| || |||| | | ||
Sbjct 76640 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 76699
Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332
| |||| || || || || ||||| || || || | || || ||| |||||||||
Sbjct 76700 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 76759
Query 63333 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390
|| | |||| ||||| || || || ||||| || || || | || || ||
Sbjct 76760 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 76817
Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450
| ||||| || |||||||| || || |||||| |||||| | ||| ||||| |||
Sbjct 76818 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 76877
Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510
|| || | ||| || |||||||| | ||||| || |||||||| || | ||
Sbjct 76878 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 76937
Query 63511 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63564
||| | || ||||| || |||| | || | || | | |||| |||
Sbjct 76938 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 76991
Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624
|| || || |||||||||| ||||||||| || | ||||| ||||| | | |||
Sbjct 76992 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 77051
Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684
| | ||| || || | || ||||| ||||| || | ||| ||||| || ||
Sbjct 77052 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 77111
Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATAC 63743
||| | ||| | |||| || | |||||| | ||| | || ||| ||
Sbjct 77112 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 77170
Query 63744 TTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803
| || || ||||| | ||| | || || || ||||||| | | | || ||
Sbjct 77171 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 77230
Query 63804 TCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862
||| || | || | || || |||| ||||| ||||| || || || || | |||
Sbjct 77231 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCG 77289
Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919
|| || ||||||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 77290 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 77346
Score = 93.3 bits (102), Expect = 5e-14
Identities = 211/317 (67%), Gaps = 3/317 (1%)
Strand=Plus/Plus
Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897
|||| ||| | |||||||| || || || | || | | |||||||| ||||||||
Sbjct 75256 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 75315
Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957
||||| || ||||| || |||| || ||| ||||| || || | ||| |
Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375
Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017
|||||| || || || || | ||| || ||| || ||||| || || | || |||
Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435
Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077
||||||| | || || || | ||| ||||||| || || || | ||||||
Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495
Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134
|| | |||| | | | | ||||||||||| ||| || || ||||| | ||||||
Sbjct 75496 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 75555
Query 62135 ATCTCATCATTCCATAA 62151
|| | ||| ||||||
Sbjct 75556 ATATTGTCAGACCATAA 75572
>seq105
Length=86313
Score = 123 bits (136), Expect = 3e-23
Identities = 374/572 (65%), Gaps = 18/572 (3%)
Strand=Plus/Minus
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|||| || || || || ||| ||| || ||||| || | | ||| | ||||| ||
Sbjct 44618 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 44559
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| || || || ||||| || |||||||| ||||| || ||||| || || | ||
Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 32829
|| || || || || || || || |||||||||| || | || || ||| || | |
Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 44440
Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 44439 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 44380
Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCAATCA 32943
|| ||||| || || || | | | | | | || || | || || |||||||
Sbjct 44379 AATGGCATTGAACAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 44324
Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003
|| || |||| || || |||||||| || || || || ||||||||||| |
Sbjct 44323 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 44264
Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063
||||||| ||||| || || | || || || | | |||||| || || || |
Sbjct 44263 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 44204
Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33122
| ||| ||| ||||| || || | | || || || || | |||||| ||||
Sbjct 44203 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 44145
Query 33123 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179
| || ||||| || | || ||| ||||| | ||| | || || | ||||| ||
Sbjct 44144 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 44085
Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| ||||| ||||| || ||||| | ||||||
Sbjct 44084 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 44053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633624238008000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |