Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq105 179 4e-40 >seq105 Length=86313 Score = 179 bits (198), Expect = 4e-40 Identities = 480/726 (66%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || |||||||| ||||| |||| ||||||||||| |||| Sbjct 44774 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAG 44715 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||| ||||||| ||| || |||||||| || ||||| || | | ||| || || Sbjct 44714 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGAT--CTTTT 44657 Query 93047 ACTCTAC-TATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | | | | ||| ||| |||| | | || | ||| | ||| ||||||||| Sbjct 44656 GCACAAGGTCCTTGCTGGGGCGGTTGTTC-AGATGCGAGAACAGCAGGCAAGCAAAGTCG 44598 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || | || || || || || || | ||| || ||| || | ||| || | || Sbjct 44597 GTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGA 44538 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || || |||||| || || || || || || || ||||| || || || || Sbjct 44537 CCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACA 44478 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || ||||| || || | || | |||||| | | || | ||||||| || | | Sbjct 44477 GCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGA 44418 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| ||||| || || || || | || || || || || || ||||| Sbjct 44417 GCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTG 44358 Query 93344 CGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 |||| || | || | ||||| || || || | ||| || || ||||||| |||| Sbjct 44357 CGCTGCGAGGGCTCCTTG-ATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGAT 44299 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| || ||||| |||||||| || | || || | ||||||||| || Sbjct 44298 GTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGCACCTCGCC 44239 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 || || | ||| ||||||||||| ||||| || ||||| || || ||||| || || | Sbjct 44238 TGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAG 44179 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATC 93579 || || || || | | ||| || | || | | || | ||| ||| ||||| Sbjct 44178 AATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATC 44119 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639 || || ||||| | || || ||||||| || || || || || || |||||||| | Sbjct 44118 CTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTG 44059 Query 93640 CCATAT 93645 ||| || Sbjct 44058 CCAGAT 44053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556853978455200