Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq105 125 1e-23 seq106 100 6e-16 seq116 96.9 7e-15 >seq105 Length=86313 Score = 125 bits (138), Expect = 1e-23 Identities = 523/820 (64%), Gaps = 13/820 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| |||| |||||| | || ||||| ||||||||||||||||||||||||| Sbjct 44876 TCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 44817 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| ||| | ||| || || || | | |||||| || |||||||| | Sbjct 44816 GCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGGTCAGCAACAAACTCAATG 44757 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| |||| |||||| || | || || || || | ||||| | | Sbjct 44756 TACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGG 44697 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798 || ||||| ||| | | || || || | || | ||| | | | | | Sbjct 44696 AACTCCTTCTCGATCACGACGGCATCAGTGATGATCTTTTGCACAAGGTCCTTGCTGGGG 44637 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| ||| | ||| |||| || |||| | |||||| ||||| || Sbjct 44636 C-GGTTGTT---CAGATGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATC 44581 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| || | |||||| || | ||| |||||||| | ||||| || | |||||| Sbjct 44580 ACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCA 44521 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | |||| || ||||| | | ||||||||| | | ||||| || Sbjct 44520 GAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 44461 Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| ||||| ||||| | | | | ||||| | ||||| | ||||| Sbjct 44460 GCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCG 44401 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | | ||| || || || || |||| || || | | |||| | |||| Sbjct 44400 GCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTGCGCTGCGAGGGCTCCTT 44341 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | |||| ||| || ||||| | || || |||||| ||| | | ||||| Sbjct 44340 GATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTG 44281 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 | || | ||||| || || ||| || | || || || ||| | | | Sbjct 44280 GAAACCGTAGAAGCAGCGGGCCTCGGGGATCTG-CACCTCGCCTGAGAAGCGCTCAACGA 44222 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 || || | || |||||||| | | ||||||||| |||||||| |||||||| Sbjct 44221 GATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGT 44162 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 |||| || | ||| || || ||||||| | |||| | |||| || | Sbjct 44161 ACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCT 44102 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || | |||||||| | || | | |||||||||||||| Sbjct 44101 CCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 44062 >seq106 Length=86074 Score = 100 bits (110), Expect = 6e-16 Identities = 174/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 279320 CGAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCG 279378 ||| | |||| |||| ||| ||| |||||||||||||| |||| |||||| || | Sbjct 53792 CGATGAAGAGGAGGATGAC-GAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCCCTTG 53734 Query 279379 CATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGT 279438 | || |||| ||||| ||||| ||| || | ||| | |||||||| | || | Sbjct 53733 CCTACGGTGCCAAGATCCTGCTTAACCAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCT 53674 Query 279439 ATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACG 279498 | ||||| |||||||||||| | || ||| || || ||||| ||||| |||| Sbjct 53673 ACGGTCTGTGCGGTCCCAATGGTTCCGGAAAGTCTACCCTGATGCGTGCCATCAACAACG 53614 Query 279499 GTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 ||| | || || || || || ||| || ||||| | ||| || | || ||||||||| Sbjct 53613 AACAGGTCGAGGGCTTCCCCAA-GCAGTCCGAGGTCAAGACTGTCTTCGTCGAGCACGAC 53555 Query 279558 ATCGACTC 279565 | ||||| Sbjct 53554 CTGGACTC 53547 >seq116 Length=83673 Score = 96.9 bits (106), Expect = 7e-15 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| || || | || ||||||||||||||||| | | | ||||| | || Sbjct 75402 CTGCGATTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGA 75461 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| || || | ||||| | |||||| | | ||||| Sbjct 75462 AATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTG 75521 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 || || || || |||||||| | |||||||| | || ||||| ||| || | Sbjct 75522 AATGGAGCCATTGTCCGCAATAATGCGATTCTTCATATTGTCAGACCATAAACCAAGATC 75581 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 | || || || | || | | |||||| || ||||||| ||||| ||| ||| || Sbjct 75582 GACTAGGTCACGTAGGAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCG 75641 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCG 293382 ||||||||| || ||| ||||||| Sbjct 75642 CTGGTAAATGTTGGATGTGTAGGGTTCG 75669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823894224180