Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq28 159 6e-34
seq61 154 3e-32
seq106 150 3e-31
seq105 134 3e-26
seq100 132 9e-26
>seq28
Length=151797
Score = 159 bits (176), Expect = 6e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285
||||| | || || || || |||| |||||||| || || ||||| || ||||||||
Sbjct 109013 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 108954
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| || | ||||| || | |||||| || ||||| ||||| | || |||
Sbjct 108953 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGG 108894
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
||||| || || || ||||| || || ||||| | |||||| || ||||| || |
Sbjct 108893 TCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAG 108834
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||| ||||| || ||||| | |||||||||||| || |||||
Sbjct 108833 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 158 bits (174), Expect = 2e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || || || ||||| || ||||| || |||||
Sbjct 108548 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAA 108489
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || ||||| || |||
Sbjct 108488 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 108429
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| || |||||||| | || || |||
Sbjct 108428 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 108369
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|| | ||| ||||| ||||| || |||||||||||
Sbjct 108368 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 108334
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || || || ||||| || ||||| || || ||
Sbjct 108776 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAC 108717
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||| | || || || || ||
Sbjct 108716 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 108657
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || || ||||| | |||||| || ||||| || | || || |||
Sbjct 108656 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108597
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || ||||| | |||||||||||| || |||||
Sbjct 108596 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
>seq61
Length=115161
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| || | ||| || |||||||| || |||||||| || |||||
Sbjct 22263 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 22322
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | || ||||| || |||
Sbjct 22323 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 22382
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 22383 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 22442
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||| ||||| || ||||| ||||||||||||||
Sbjct 22443 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 22480
>seq106
Length=86074
Score = 150 bits (166), Expect = 3e-31
Identities = 671/1045 (64%), Gaps = 56/1045 (5%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
||||| |||||||||| | || ||| |||||| ||||| ||||| ||| |||||
Sbjct 52758 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGGTCAATGTGGGCAAAAGCG 52817
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | || ||| ||
Sbjct 52818 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACAGTGGGA 52877
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || || ||||| ||||| || || | ||| || ||||||||||| || ||
Sbjct 52878 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 52937
Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220
||| |||| ||||| |||| | ||| | | | || | ||| |||| ||||
Sbjct 52938 ACGGCAATACGGGACGACAGAGAGCACTGGAAAGTGATGTCG--GAA-ATCTG-GGGC-- 52991
Query 225221 GTTTGGTAAGCAAAGGCCACGCCACG--CAGCTTCATG---------ATGGCACGGTCCT 225269
|||||| ||| || | | || ||| || ||||| | |||
Sbjct 52992 --TTGGTAGTACCAGGGTACTGGAAGGTCATCTTGGTGGCACGAAGAATGGCCTTGGCCT 53049
Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329
||| | | |||||| ||||| |||||||||||||| ||| | || | | | |
Sbjct 53050 TGGTCTTCACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCAC 53109
Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
|| |||||||| || ||| ||| | ||| || || | | |||||| ||
Sbjct 53110 CAAGTTCGTAGTATGACTTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGTTACCAC 53169
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
||| | | ||||||| | || |||| || ||||| ||| | ||| || ||||
Sbjct 53170 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 53225
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGG 225505
||||||||||||||||| || || || ||||| | || | | || || | |||
Sbjct 53226 AGGAAGCCAGAGTCGTGAGAGACGATAATGGAAGTGCAAG---GAGAGTTGCAC---AGG 53279
Query 225506 TGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
| || | ||||| ||||| | || |||| ||||| ||||| ||||| |||||
Sbjct 53280 TA-GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAG 53338
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|||||| |||| | | || | ||| || |||| ||||||||| ||||| || ||
Sbjct 53339 CAGGATATCAGGAGCCTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACC 53398
Query 225625 GGACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683
|| || | | ||| | ||| | | || ||| || || |||| |||| |||
Sbjct 53399 AGAAAGAGCGGAGATCTCACCAGTAATCATTTGCTCGGTGAA-GCCGAACTCGGTCAGCT 53457
Query 225684 TCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAAT 225743
|| ||| | | ||| | | | || | ||||||| ||||| | || | |
Sbjct 53458 GCTTGATGACGTCCTCCTTGGTGGT---AGTG---ACGTTGGCGTCGGCC-AGCT-TCTT 53509
Query 225744 CATATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792
|||| | |||||| || | | ||| | ||| | |||||| || ||| |
Sbjct 53510 CATAGTCCATTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAA 53569
Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852
|| ||| || || || | |||||||||||| | ||| | || || |||||
Sbjct 53570 GACAGTCTTGACCTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACG 53629
Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912
| ||||||| ||| || | || ||||||||| || ||||| | | || |||||
Sbjct 53630 CATCAGGGTAGACTTTCCGGAACCATTGGGACCGCACAGACCGTAGCGCTGACCACGCTT 53689
Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972
| ||| | || ||| || ||||||||| |||| |||||||||||||| |||
Sbjct 53690 CAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAAGTGCA 53749
Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997
| |||||| |||||||||||||||
Sbjct 53750 GTTGCACAGATCCTCACCCTCCTCG 53774
>seq105
Length=86313
Score = 134 bits (148), Expect = 3e-26
Identities = 308/459 (67%), Gaps = 10/459 (2%)
Strand=Plus/Minus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
|| || ||||||||||| || || || ||| |||||||| | |||||| ||||
Sbjct 44909 ACACCAGCCTTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGC 44850
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058
|| ||| |||||||||||| |||||||| ||| | || ||| || || ||
Sbjct 44849 GAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGA 44790
Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118
|| | | ||||||||| || ||||| |||||||| ||||||| || | ||||||
Sbjct 44789 GCAACAAGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATT 44730
Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178
|| | || | |||||| | || ||| | ||| ||||| ||| | |||| || ||
Sbjct 44729 CCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCA 44670
Query 10179 TCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234
|| ||| | | || | ||| ||| | | |||||| || | ||| ||||
Sbjct 44669 GTGATGATCTTTTGCACAAGGTCCTTGCTGGGGC-GGTTGTTC---AGATGCGAGAACAG 44614
Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294
|| |||| | ||| |||||||| || || || | |||||| || ||
Sbjct 44613 CAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGT 44554
Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354
|||||| |||||||| || || ||||| |||||||| |||| | ||| | || |||||
Sbjct 44553 CAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAA 44494
Query 10355 CAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCT 10392
| | ||||| || ||| | |||| || |||||||
Sbjct 44493 AAAGATGCCCTCGACAGCA-GCAAAGGCAACTAGGCGCT 44456
>seq100
Length=89839
Score = 132 bits (146), Expect = 9e-26
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || || || || || | ||||| || | |||||| || ||||| ||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| |||||||| | |||||| |||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|| ||||| | || || || || | ||| || || || ||||| ||||||||||||||
Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 17029 ATCTGCAT 17022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921611110125600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |