Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq28 140 3e-28
seq100 96.9 3e-15
>seq28
Length=151797
Score = 140 bits (154), Expect = 3e-28
Identities = 163/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || || || || | ||||||||||| ||||||||||| |||
Sbjct 108551 ATACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCG 108492
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||| ||||| || || |||||| ||||||||||||| |||||||||
Sbjct 108491 GAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 108432
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| |||||||| ||| |||
Sbjct 108431 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCG 108372
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372
|| || | ||| | || || ||||| || || || ||||
Sbjct 108371 ACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 108332
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || ||| || || | ||||||||||| ||||||||||| ||
Sbjct 108779 ATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCC 108720
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| ||| || || || || ||||| | ||||||||||| || |||||
Sbjct 108719 GACAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGG 108660
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || || || ||||| || | | |||| ||| || | ||| |||
Sbjct 108659 GGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCG 108600
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || ||||| |||| || || || || || |||||
Sbjct 108599 ACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | |||| ||| | ||||| || || ||||||||||| |||
Sbjct 108267 ATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 108208
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| ||||| || || |||||| ||||||||||||| |||||||||
Sbjct 108207 GACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 108148
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | |||| || || | ||| ||
Sbjct 108147 GGGATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCC 108088
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360
|| || | ||| | || ||||| ||||
Sbjct 108087 ACCTCGAGGGTGATGGTCTTGCCAGTCA 108060
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | || ||| || || | ||||| || || || |||||||| |||
Sbjct 109004 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 108945
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || || ||| ||||| || || |||||| ||||||||||||| ||||| |||||
Sbjct 108944 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 108885
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| || || || || ||||| || | | |||| ||| || | ||| |||||
Sbjct 108884 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108825
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || ||||| |||| || || || || || |||||
Sbjct 108824 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
>seq100
Length=89839
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254
|| ||||||||||| || || ||||| ||| || || || || |||||| ||||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314
|| ||||| |||||||| |||||||| || ||||| |||||| || | | ||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374
| ||||| | ||| || || || | ||| | ||| || || || || || || || |||
Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030
Query 114375 ATCTGCAT 114382
||||||||
Sbjct 17029 ATCTGCAT 17022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420129382019760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |