Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq28 114 3e-20
seq100 84.2 5e-11
>seq28
Length=151797
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| ||||| || || || | || ||||| ||||||
Sbjct 108968 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAG 108909
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || ||||| || || ||||||||||| || | || || ||
Sbjct 108908 ATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTG 108849
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || |||||||| || || ||||| || |||| |||||||||
Sbjct 108848 TCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACG 108789
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 108788 AAGATTTGCAT 108778
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || || ||||| | || || || || || || | || ||||| || ||
Sbjct 108741 TTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAA 108682
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| |||||||| ||| ||||| || || ||||||||||| || | || || ||
Sbjct 108681 AATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATT 108622
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| || || |||||||| || || ||||| || |||| ||||||||
Sbjct 108621 GTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGAC 108562
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 108561 GAAGATTTGCAT 108550
>seq100
Length=89839
Score = 84.2 bits (92), Expect = 5e-11
Identities = 134/191 (70%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||| | || || || || || || | || || || |||||||||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || || ||| || || || || ||||| || || | || || ||
Sbjct 17149 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 17093
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || || || ||||| || |||||||| || || || |||||||||
Sbjct 17092 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 17033
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 17032 AAAATCTGCAT 17022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179639587964440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |