Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28 114 3e-20 seq100 84.2 5e-11 >seq28 Length=151797 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || || || | || ||||| |||||| Sbjct 108968 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAG 108909 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || ||||||||||| || | || || || Sbjct 108908 ATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTG 108849 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || |||||||| || || ||||| || |||| ||||||||| Sbjct 108848 TCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACG 108789 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 108788 AAGATTTGCAT 108778 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||| | || || || || || || | || ||||| || || Sbjct 108741 TTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAA 108682 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || |||||||| ||| ||||| || || ||||||||||| || | || || || Sbjct 108681 AATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATT 108622 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || || |||||||| || || ||||| || |||| |||||||| Sbjct 108621 GTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGAC 108562 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 108561 GAAGATTTGCAT 108550 >seq100 Length=89839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || || || || || || | || || || ||||||||| Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || ||||| || || | || || || Sbjct 17149 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 17093 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| || |||||||| || || || ||||||||| Sbjct 17092 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 17033 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 17032 AAAATCTGCAT 17022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639587964440