Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq105 111 3e-19 seq106 93.3 9e-14 >seq105 Length=86313 Score = 111 bits (122), Expect = 3e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | | ||| ||||| ||| | ||| ||| | || ||| | Sbjct 44662 ATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGT 44721 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | || |||||| |||| || ||| |||||||| || || || || |||||| | Sbjct 44722 CTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTG 44781 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || || || | ||||| |||||| ||| |||||||| | ||| |||||| Sbjct 44782 CTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAG 44841 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| ||||| || || ||||||||||| || ||||||||| | || || || Sbjct 44842 AACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTACCAGAAG 44901 Query 243742 CCTGGTGTG 243750 |||||||| Sbjct 44902 GCTGGTGTG 44910 >seq106 Length=86074 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Plus Query 333641 ACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTA 333700 |||||| ||||| |||||||||||||| | || | ||| | | ||| |||| Sbjct 53060 ACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCACCAAGTTCGTA 53119 Query 333701 GTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 ||| ||| | | || ||| | |||||| || ||||||| ||| || || ||| Sbjct 53120 GTATGACTTGGCCGA---GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTAACG 53176 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACC 333816 ||| ||||| | | | ||||| |||| ||| | | || || || ||| ||||| | Sbjct 53177 CTTAAGCTTGAAGC---GCTCGTAGTGGACAAT-GTGCTGGCAGACGTTGTCAAGGAAGC 53232 Query 333817 CGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTATTCA 333872 | |||||||| || || || | | ||| || | |||| ||| |||||| || Sbjct 53233 CAGAGTCGTGAGAGACGATAATG---GAA--GTGC--AAGGAGAGTTGCACAGGTAGTCC 53285 Query 333873 ATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGC 333932 ||||||| | ||||| |||| ||||||||||| |||||||||||||| || | Sbjct 53286 TCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAGGATA 53345 Query 333933 TTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | | | || | ||||| ||| ||||| || ||||| ||||| || || ||||| Sbjct 53346 TCAGGAGCCTCGAAAACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 53404 Query 333992 AG 333993 || Sbjct 53405 AG 53406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866151963000