Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq28 123 2e-23 >seq28 Length=151797 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | || |||||| | || ||||||||| Sbjct 108980 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 108921 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | ||||| ||||||||||||||||| || || || || || || || || Sbjct 108920 TTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTG 108861 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | |||||| || || ||||| | || | ||||||||| ||| Sbjct 108860 GACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTC 108801 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| |||||||| Sbjct 108800 AAGGTCTTGACGAAGATTTGCAT 108778 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| ||||||||||| || | | ||| || | || || |||||| Sbjct 108752 TGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGAGCTGC 108693 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| ||||||| |||||||| || || || || || || || || || || || Sbjct 108692 TTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTG 108633 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | |||||| || || ||||| | || | ||||||||| ||| Sbjct 108632 GACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTC 108573 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| |||||||| Sbjct 108572 AAGGTCTTGACGAAGATTTGCAT 108550 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||||||||| | || || || || ||||||||||| || | Sbjct 108265 ACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 108206 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || ||||||||||| || || | ||||| ||||||||||| ||||| Sbjct 108205 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 108146 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | ||||| || ||||| Sbjct 108145 GATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCCAC 108086 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 || | || | ||||||||| |||| Sbjct 108085 CTCGAGGGTGATGGTCTTGCCAGTCA 108060 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| ||||||||||| || | | ||| || | || ||||||||| Sbjct 108524 TGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGC 108465 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || || || | ||||| ||||||||||| |||||||| || || || || || || || Sbjct 108464 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 108406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638679351200