Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq116 147 2e-30 >seq116 Length=83673 Score = 147 bits (162), Expect = 2e-30 Identities = 484/740 (65%), Gaps = 18/740 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || || || || || || || || || | | ||| ||||||| |||||||| | ||| Sbjct 76916 CCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGAC 76857 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||| |||| || |||| ||| | ||||||| ||||| | || || Sbjct 76856 -ATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTC 76798 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || ||||| ||| ||| ||| |||| ||||||| || || ||| Sbjct 76797 CAAGATGGCTGGTGGTATCGGTCTCAATGTTCAC--CGTATTCGTGCCACTGGCTCTTAC 76740 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || || || || || || |||||| |||| || ||||| || || ||||||||| Sbjct 76739 ATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAACAAC 76680 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || ||||||||||| | | | || | || || | |||||| Sbjct 76679 ACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTC 76620 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| ||||| || || || | ||| ||||| | || ||||||||||| || || Sbjct 76619 GAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAA 76560 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | || | ||||| |||| || || ||| | ||| | || ||||| || Sbjct 76559 GAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGT 76500 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || ||||| || | ||||| ||| | || ||||||||||| ||||| || | || Sbjct 76499 GTTGAGAAGAATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGA- 76441 Query 94375 GTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGG 94429 ||| || ||| ||||| | |||||| ||||| | |||| | || Sbjct 76440 --TTG-CTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCGG 76384 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | | |||| | | || ||| |||||| || || |||| | ||| |||| Sbjct 76383 TC-GCATGGTTGTCAAGGCCCAGAAACTGTGGTATGCCATTCTGGAGGCTCAGACTGAGA 76325 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | || | || | || | | ||| || | ||| |||| |||| ||| ||| | | Sbjct 76324 CTGGCAACCCTTTTATGCTCTACAAAGACCACTG-CAACCGCAAGAGCAATCAGAAAAAT 76266 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || || ||||| |||||||| |||||| ||||||| | | || || Sbjct 76265 CTAGGTACCATTCGCAGTTCGAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGAT 76206 Query 94609 GAGATTGCTGTGTGTAACCT 94628 ||| | |||||||| ||||| Sbjct 76205 GAGGTCGCTGTGTGCAACCT 76186 Score = 131 bits (144), Expect = 2e-25 Identities = 200/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || || || |||||||| || ||| |||| ||||||| || |||||||| |||| Sbjct 75731 CTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTCTGGGCAACAATGAGTGC 75672 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 |||||||||| ||| |||||| | ||| | | || || || || || || |||| ||| Sbjct 75671 TTCGAACCCTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 75612 Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| |||||||| ||||| | || ||| ||| | ||| |||||| | || Sbjct 75611 GTCAACCCCTGGCTCCTACGTGACCTAGTCGA-TCTTGGTTTATGGTCTGACAATATGAA 75553 Query 95274 GAACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332 ||| | | | | || | ||| |||||| | ||||||||| | || || | || | Sbjct 75552 GAATCGCATTATTGCG-GACAATGGCTCCATTCAGAACATCTCTAGCATTCCTGCTGATA 75494 Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || ||||||||||| |||||||| | ||||| Sbjct 75493 TTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCG 75454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717139640800